BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331298
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28927.1 | Symbols: | transposable element gene | chr5:1095... 267 4e-71
> AT5G28927.1 | Symbols: | transposable element gene | chr5:10959091-10961379
REVERSE LENGTH=2289
Length=2289
Score = 267 bits (144), Expect = 4e-71
Identities = 203/231 (88%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 1 ATGTATCTCAATGATATAGAGACACGATTTACTCGGATTGGCCGCGTTGATGATCGACCT 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1403 ATGTATCTCGATGATATAGAGACACGATTTACTCGGATTGGCCGGGTTGATGATCGACCT 1462
Query 61 CAAGCGGAGACTAGCATAAGACC-AAATTCAAAACTTCCA-TTTATATTTCCAAAACTTG 118
| ||| ||||||||||||| ||| ||||||| ||||| | ||| |||||||||| ||||
Sbjct 1463 CTAGCTGAGACTAGCATAA-ACCCAAATTCAGAACTTTTACTTT-TATTTCCAAACCTTG 1520
Query 119 AAAGATTTGTTGGAGCATGCTCATGTT-ATACTCTTAATCATGTAGAGAGGCAGCAAGCA 177
|| | |||||||||| | | | ||| |||||||||||||||||||| |||| ||||||
Sbjct 1521 GAATAGTTGTTGGAGCGGG-TAAAGTTTATACTCTTAATCATGTAGAGCGGCAACAAGCA 1579
Query 178 CATCAACATGTATTGGTCAATTGTCAACTACTAGATCACTTACGAGAGTAA 228
|||| ||||||||||||||| || ||||||||||||||| |||| ||||||
Sbjct 1580 CATCGACATGTATTGGTCAACTGCCAACTACTAGATCACCTACGGGAGTAA 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5