BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331300
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48945.1 | Symbols: LCR46 | low-molecular-weight cysteine-ri... 326 8e-89
> AT5G48945.1 | Symbols: LCR46 | low-molecular-weight cysteine-rich
46 | chr5:19844778-19845518 FORWARD LENGTH=276
Length=276
Score = 326 bits (176), Expect = 8e-89
Identities = 230/257 (89%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACAAACAAATTTTCATCTATTGTGTTGCTTTCGTTGATGGTGTTTGCTGCTATT 60
||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1 ATGGCAACAAATAAATTTTTATCTATTTTGTTGCTTTCGTTGATGGCGTTTGCTGCTATT 60
Query 61 TTGTTGCCAATGATTTCAGGACAAATGATACCATGTTTAGAGGGGGTATGTACAAACTCA 120
|| |||||||||||||||||||||| ||| |||||||| ||| | |||||||||| ||
Sbjct 61 CTGCTGCCAATGATTTCAGGACAAATCATAACATGTTTACCGGGCGAATGTACAAACCCA 120
Query 121 TCGGAGTGCAATGAACCCTGCAAATCAAAAGGATACCAAGGAGGGGCTTGTGTACGCATG 180
||||| ||||||| | | ||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 121 TCGGAATGCAATGCAGCTTGCAAATCAAATGGATACAAAGGAGGGGCTTGTGTAAGCATG 180
Query 181 AGCATAGACACACCCACCGGTGCTTGTTGTTGTAAACCTAATTTCAAATCTCAAGATTCT 240
||||||| | || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGCATAGGCTCAACAACCGGTGCTTGTTGCTGTAAACCTAATTTCAAATCTCAAGATTCT 240
Query 241 TTCGAATTTAATGATAT 257
||| ||| |||||||||
Sbjct 241 TTCAAATCTAATGATAT 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12215063007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5