BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331317
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49610.1 | Symbols: | Domain of unknown function (DUF313) ... 769 0.0
> AT3G49610.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:18390413-18391417 REVERSE LENGTH=1005
Length=1005
Score = 769 bits (416), Expect = 0.0
Identities = 639/742 (86%), Gaps = 33/742 (4%)
Strand=Plus/Plus
Query 150 CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTAtttttttACCAGAGTATA 209
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 285 CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTGTTTTTTTACTAGAGTAT- 343
Query 210 CACACGACGAAACAATGAAACACTTAATAGA-GTTTCTGCTTCTTCATCGCTCTTCAACA 268
||||| || || ||||| | ||||| | |||||| |||||||||||||||||||||
Sbjct 344 -ACACG-CG--AC---GAAAC-CATAATA-ACGTTTCTACTTCTTCATCGCTCTTCAACA 394
Query 269 CGGCTGAGTTTGAGAGGACGGAGACTAAAAGCCCTCCAAACCCTAATTTGCAATCTTCCC 328
||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||| |
Sbjct 395 CGGATGAGTTTGAGAGGACGGAGACTAAAAGCCCTACAATCCGTAATTCCCAATCTTCAC 454
Query 329 CGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCAGAAAAGGAGTAGTGGTA 388
||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 455 CGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCA-AA--G---TAGTGGTA 508
Query 389 AATCCAAGAAAGCAAAGGTTGATCCTTTATCACAGACAGCTA-GAGAG-G-CGCCAGAGT 445
||||||||||| ||||| |||||||||| |||| ||| || ||||| | |||||||||
Sbjct 509 AATCCAAGAAACCAAAGTTTGATCCTTTCTCACTGACTGCGGCGAGAGAGACGCCAGAGT 568
Query 446 GGCTTTTCGATATGATGAGAAAGATGAAAGAAGCTGAAGG-CTCGGTTAGGCTGATCTAT 504
||||||| ||| |||||||||||||||| | ||| ||||| | || | | ||||||||
Sbjct 569 GGCTTTTAGATGTGATGAGAAAGATGAAGGGAGCCGAAGGAC-CGATCAAACTGATCTAC 627
Query 505 -AGGAAGACTTTGACCGCGAGTGACGTCAAGCCAAGCCAGAGCCGTCTCTTAATACCTTT 563
|| |||||||||||||| | |||||||||||||||| |||| |||||||||||||||||
Sbjct 628 GAG-AAGACTTTGACCGCAACTGACGTCAAGCCAAGCGAGAGTCGTCTCTTAATACCTTT 686
Query 564 CAGTCAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCAAGCCATAGGCATAGA 623
|| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 687 CAATAAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCGAGCCATAGCCATAGA 746
Query 624 TAAAGAAGAAGAAGACGACA-ACAACAATAATATTGGTATGAGAACGATTGTCGTGGATC 682
||||||||||||||| || | ||| ||| || |||||| ||| ||||||| ||||| |||
Sbjct 747 TAAAGAAGAAGAAGAAGA-AGACACCAAGAAAATTGGTGTGAAAACGATTATCGTGAATC 805
Query 683 AATTATCTAAAGAGTGG-GCTTTACGTTTTAAGATATGTGTGATGAAGAAGAAA---TCT 738
|||| |||||||| ||| | |||||||||| |||||| ||||||||||||||| |||
Sbjct 806 AATTCTCTAAAGAATGGAG-TTTACGTTTTCTGATATGGGTGATGAAGAAGAAAAAATCT 864
Query 739 GGAAAAAGAACCTTGAACTACGCTTTGAATCGGGGGTGGAACAACGTCGTCA-GTGGTAA 797
||||| |||||||| ||||| ||||||||||||||||||| |||||| | |||||
Sbjct 865 GGAAATGGAACCTTGTACTACACTTTGAATCGGGGGTGGAATGGTGTCGTCTCG-GGTAA 923
Query 798 CAAATTGAAAGAGAAAGACACGATTAGTCTTTGGACTTTCAGGTGTGGTGAAGACCGCTG 857
||| | |||| || |||| |||||||||||||||||||||||||||| || || |||
Sbjct 924 CAAGCTCAAAGCCAACGACAATATTAGTCTTTGGACTTTCAGGTGTGGTGGAGTCCTCTG 983
Query 858 CTTTGCCCTTGAGAAAGAGTAG 879
|||||||||||||||||||||
Sbjct 984 TTTTGCCCTTGAGAAAGAGTAG 1005
Score = 159 bits (86), Expect = 3e-38
Identities = 97/102 (95%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 1 ATGTGGTCGCGTTTTCGTGATTTGGCGGATAAAGCTGATATGCTATATGAAAGAGAAGGA 60
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGTGGTCACGTTTAAGTGATTTGGCGGATAAAGCTGATATGCTATATGAAAGAGAAGGA 105
Query 61 GTATCCAAAGACCGCAAGAGTGTCTCAGAAGAAGAAGA-GAA 101
||||||||||||||||||||||||||||||||||||| |||
Sbjct 106 ATATCCAAAGACCGCAAGAGTGTCTCAGAAGAAGAAGAAGAA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5