BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331322 Length=1368 Score E Sequences producing significant alignments: (Bits) Value AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 878 0.0 AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 874 0.0 > AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22192773-22195400 FORWARD LENGTH=1819 Length=1819 Score = 878 bits (475), Expect = 0.0 Identities = 791/943 (84%), Gaps = 24/943 (3%) Strand=Plus/Plus Query 222 TGATCCTGAATACAAACTAATCGTAGATTGCAATCAGCTGTCAGTTGATATTGAGAACGA 281 ||||||||| || || || || || ||||| |||||||| || || ||||||||||| || Sbjct 405 TGATCCTGAGTATAAGCTTATTGTGGATTGTAATCAGCTTTCGGTCGATATTGAGAATGA 464 Query 282 GATAGTCATCGTCCACAACTTTATCCGCGACAAGTACGGA-CGTAAGTTCCAAGAGCTTG 340 || || || ||||||||||||||| ||||||||| | | |||||| |||||||||| Sbjct 465 AATCGTTATTGTCCACAACTTTATCAAAGACAAGTAC-AAGCTTAAGTTTCAAGAGCTTG 523 Query 341 AGTCGCTAATACATGACCCAATCGATTATGCCCGTGTTGTGaaaaaaaTTGGCAATGAGA 400 ||||| | | ||| |||| || || ||||| |||||||||| || ||||| ||||||| Sbjct 524 AGTCGTTGGTTCATCACCCTATTGACTATGCATGTGTTGTGAAGAAGATTGGGAATGAGA 583 Query 401 CAGATTTAACCCTTGTTAATCTGGAAGACCTTCTTCTTCTTAAACCAGCGACTATTAT-T 459 | ||||| | |||||| |||| | |||||||||| ||| |||| | ||| || Sbjct 584 CGGATTTGGCTCTTGTTGATCTCGCTGACCTTCTTC--CTT----CAGCTATTATCATGG 637 Query 460 TCTGTTTCACTTACTGCTTTAACCACGAAAGGGAATCCATTGCCAGATGATATCCTACAA 519 | ||||||| ||||||||||||| |||||||||| | || ||||||| ||| | | ||| Sbjct 638 T-TGTTTCAGTTACTGCTTTAACTACGAAAGGGAGTGCACTGCCAGAGGATGTTTTGCAA 696 Query 520 AAGACGTTAGACGCTTGTGATCGGGCTCTTA-ATCTTGATTCCGCAAGGAAGAAGGTTCT 578 ||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||| || Sbjct 697 AAGGTGTTAGAGGCTTGTGATCGGGCT-TTAGATCTTGATTCCGCAAGGAAGAAGGTCCT 755 Query 579 TGACTTTCTTGAAAGTAAGATGGGATATATCGCACCAAATCTTTCTGCCATTGTCGGGAG 638 ||| ||| |||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||| Sbjct 756 TGAGTTTGTTGAAAGTAAGATGGGATCTATTGCACCTAATCTTTCTGCTATTGTTGGGAG 815 Query 639 CGCTGTTGCAGCCAAGCTCATGGGAACTGCTGGAGGTTTAACGGCACTTGCAAAAATGCC 698 |||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||| Sbjct 816 TGCTGTTGCAGCCAAACTCATGGGGACTGCTGGAGGTTTGTCAGCACTTGCTAAAATGCC 875 Query 699 TGCCTGTAATGTTCTAGTACTTGGCCACAAGAGGAAGAACCTTGAC-GGATTCTCTACTG 757 ||| |||||||||| ||| ||||||||||||||||||||||||| | || || ||| ||| Sbjct 876 TGCGTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTG-CTGGGTTTTCTTCTG 934 Query 758 CAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTTCAAAGCACGCCTC 817 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 935 CAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTACCAAAGCACGCCTC 994 Query 818 CTGGACTTC-GAATGCGCGCTAGCAGGCTCTTGGCTTCAAAATCGACTTTGGCGGCAAGA 876 ||||||||| | | |||||| |||||||| ||||| ||||||| |||||||| |||||| Sbjct 995 CTGGACTTCAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCAAGA 1053 Query 877 GTTGACGCTACTAGAGGAGATGCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGCAAAT 935 ||||| ||||||||||| ||| | | | || | || || |||||||| |||||| | || Sbjct 1054 GTTGATGCTACTAGAGGGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGAT 1112 Query 936 CCGCAAGAATATTGACAAGTGGCAAGAACGTCCTCCTGGAA-AGCAACCTACGCCACTTC 994 ||| ||||| ||||| || |||||||||| |||||||| || | || |||| |||||||| Sbjct 1113 CCGTAAGAAGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGA-CAGCCTAAGCCACTTC 1171 Query 995 CTGTTCCTTATTCTGAGCCTAAAAAGAA-AAGGGGTGGTCGCCGTCTAAGAAAAACGAAA 1053 |||||||| ||||||| || || || || |||||||||||||||||||||||||| |||| Sbjct 1172 CTGTTCCTGATTCTGAACCGAAGAA-AAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAA 1230 Query 1054 GAAAGGTATCAAGTGACAGACATAAGGAAGTTAGCCAATAGGATGGCGTTTGGTACACCC 1113 |||||||||||||| ||||| || |||||| | ||||| || ||||||||||||||||| Sbjct 1231 GAAAGGTATCAAGTAACAGATATGAGGAAGCTGGCCAACAGAATGGCGTTTGGTACACCT 1290 Query 1114 GAAGAGAGCTCTCTGGGTGATGGA-TATGGTGATGGATATGGA 1155 ||||||||||| || ||||||||| || || || || |||||| Sbjct 1291 GAAGAGAGCTCCCTCGGTGATGGACTA-GGAGAAGGTTATGGA 1332 Score = 183 bits (99), Expect = 3e-45 Identities = 142/162 (88%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 1210 GGTGGTGCCACTACCTCTGGTTTGAGGACATCAAGTCTGGCTTTCACTCTTGTGCAGGGA 1269 |||||||| |||||||||||||| |||||| || ||||||||||||| |||||||||| Sbjct 1438 GGTGGTGCGACTACCTCTGGTTT---GACATCGAGCCTGGCTTTCACTCCTGTGCAGGGA 1494 Query 1270 ATAGAGTTGTGCAATCCTCA--AG-CGATAGGATTAGGCAGTGGGAGTCAAAGCAGTTAC 1326 |||||||||||||||||||| || | |||||||||| ||||||| |||||||| |||| Sbjct 1495 ATAGAGTTGTGCAATCCTCAGCAGGCTTTAGGATTAGGAAGTGGGACTCAAAGCACTTAC 1554 Query 1327 TTCTCAGAGTCAGGAACTTTCTCCAAGTTCAAGAAGATTTAA 1368 ||||||||||||||||| ||||| ||| | |||||||| ||| Sbjct 1555 TTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATCTAA 1596 > AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing ribonucleoprotein, similar to U4/U6 snRNP-associated 61 kDa protein (Homo sapiens) GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain; blastp match of 63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010 putative U4/U6 snRNP-associated 61 kDa protein {Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048 REVERSE LENGTH=1812 Length=1812 Score = 874 bits (473), Expect = 0.0 Identities = 893/1095 (82%), Gaps = 32/1095 (3%) Strand=Plus/Plus Query 74 AGGAGGAGGAGGATATTGACGTGGACATGGCAG-TGTCAGAAACCCTTAACTATGATGAT 132 ||||||| || ||| | || |||| ||||| | | | ||| || ||||||||||||||| Sbjct 279 AGGAGGAAGAAGATGTGGATATGGATATGGCGGAT-TTAGAGACACTTAACTATGATGAT 337 Query 133 CTCGAGAGCGTTTCTAAGCTACAGAAAACACAGAGATACGCTGATATAATGAAGAAAGTG 192 ||||| || ||||||||||| ||||| || |||||||| | |||||| ||| | ||||| Sbjct 338 CTCGATAGTGTTTCTAAGCTTCAGAAGACTCAGAGATATGATGATATTATGCACAAAGTA 397 Query 193 GAACAGGCTC-T-CGAAGAGGTGATAGGAACTGATCCTGAATACAAACTAATCGTAGATT 250 || |||||| | ||| || | | | | ||||| ||| || || || || || |||| Sbjct 398 GAGGAGGCTCTTGGGAA-AGAT--TCTG-A-TGATCATGAGTATAAGCTTATTGTGGATT 452 Query 251 GCAATCAGCTGTCAGTTGATATTGAGAACGAGATAGTCATCGTCCACAACTTTATCCGCG 310 | ||| |||| || |||||||||||| | || || || || ||||||||||||||| | Sbjct 453 GTAATAAGCTTTCGGTTGATATTGAGGATGAAATCGTTATTGTCCACAACTTTATCAAAG 512 Query 311 ACAAGTACGGA-CGTAAGTTCCAAGAGCTTGAGTCGCTAATACATGACCCAATCGATTAT 369 | |||||| | | || ||| ||||||||||||||| | | ||| |||| || || ||| Sbjct 513 AAAAGTAC-AAGCTTAGGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTAT 571 Query 370 GCCCGTGTTGTGaaaaaaaTTGGCAATGAGACAGATTTAACCCTTGTTAATCTGGAAGAC 429 || ||||||| || || |||||||||||||| ||||| || |||||| || | | | Sbjct 572 GCATGTGTTGTCAAGAAGATTGGCAATGAGACGGATTTGACTCTTGTTGATTTTGCTG-G 630 Query 430 CTTCTTCTTCTTAAACCAGCGACTATTATTTCTGTTTCACTTACTGCTTTAACCACGAAA 489 | ||| ||||| ||||| | ||| || || ||||| ||||||||| ||| |||||| Sbjct 631 C--CTTGATCTTACTCCAGCTATTATCATGGCTATTTCAGTTACTGCTTCAACTACGAAA 688 Query 490 GGGAATCCATTGCCAGATGATATCCTA-CAAAAGACGTTAGACGCTTGTGATCGGGCTCT 548 |||| | || ||||||| ||| | || |||||| |||||| ||||||||||||| | | Sbjct 689 GGGAGTGCACTGCCAGAGGATGT-TTAGCAAAAGGTGTTAGAGGCTTGTGATCGGGAT-T 746 Query 549 TA-ATCTTGATTCCGCAAGGAAGAAGGTTCTTGACTTTCTTGAAAGTAAGATGGGATATA 607 || |||||||||||||||| |||||||| ||||| ||| |||||||||||||||| | || Sbjct 747 TAGATCTTGATTCCGCAAGAAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGTTCTA 806 Query 608 TCGCACCAAATCTTTCTGCCATTGTCGGGAGCGCTGTTGCAGCCAAGCTCATGGGAACTG 667 | || || |||||||| |||||||| ||||| |||||||||||||| |||||||| || | Sbjct 807 TTGCTCCTAATCTTTCCGCCATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACAG 866 Query 668 CTGGAGGTTTAACGGCACTTGCAAAAATGCCTGCCTGTAATGTTCTAGTACTTGGCCACA 727 |||||||||| | |||||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 867 CTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCACA 926 Query 728 AGAGGAAGAACCTTGACGGATTCTCTACTGCAACGTCACAGTCCCGTGTGGGTTATCTGG 787 ||||||||||||||| || || ||| |||||||||| |||||||||||||||||||||| Sbjct 927 AGAGGAAGAACCTTGTTGGGTTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTATCTGG 986 Query 788 AGCAGACAGAGATTTTTCAAAGCACGCCTCCTGGACTTCGAATGC--GCGCTAGCAGGCT 845 |||||||||||||||| ||||||||||||||||||||| || || ||||| ||||||| Sbjct 987 AGCAGACAGAGATTTTCCAAAGCACGCCTCCTGGACTT-GAG-GCTCGCGCTGGCAGGCT 1044 Query 846 CTTGGCTTCAAAATCGACTTTGGCGGCAAGAGTTGACGCTACTAGAGGAG-ATGCATCT- 903 | ||||| ||||||| |||||||| || |||||||| |||||||||| || || | | | Sbjct 1045 CGTGGCTGCAAAATCAACTTTGGCAGCTAGAGTTGATGCTACTAGAG-AGGATCCGT-TA 1102 Query 904 GGAACAAACGGGAAAGCTTTGAGGGAGCAAATCCGCAAGAATATTGACAAGTGGCAAGAA 963 || | || || |||||||| |||||| | ||||| ||||| |||||||||||||||||| Sbjct 1103 GGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAAGAAGATTGACAAGTGGCAAGAA 1162 Query 964 CGTCCTCCTGGAAAGCAACCTACGCCACTTCCTGTTCCTTATTCTGAGCCTAAAAAGAA- 1022 | |||||||| || ||| |||| |||||||||| ||||| |||||||||| || || || Sbjct 1163 CCTCCTCCTGCAAGGCAGCCTAAGCCACTTCCTATTCCTCATTCTGAGCCGAAGAA-AAG 1221 Query 1023 AAGGGGTGGTCGCCGTCTAAGAAAAAC-GAAAGAAAGGTATCAAGTGACAGACATAAGGA 1081 ||||||||||||||||||||||||| | ||||| |||||||||||| ||||| || |||| Sbjct 1222 AAGGGGTGGTCGCCGTCTAAGAAAA-CTGAAAGCAAGGTATCAAGTAACAGATATGAGGA 1280 Query 1082 AGTTAGCCAATAGGATGGCGTTTGGTACACCCGAAGAGAGCTCTCTGGGTGATGGA-TAT 1140 || | ||||| |||| ||| ||||||||||| ||||||||||| || ||||||||| || Sbjct 1281 AGCTGGCCAACAGGACGGCCTTTGGTACACCTGAAGAGAGCTCCCTCGGTGATGGACTA- 1339 Query 1141 GGTGATGGATATGGA 1155 || || || |||||| Sbjct 1340 GGAGAAGGTTATGGA 1354 Score = 147 bits (79), Expect = 4e-34 Identities = 139/165 (84%), Gaps = 16/165 (10%) Strand=Plus/Plus Query 1210 GGTGGTGCCACTACCTCTGGTTTGAGGACATCAAGTC-TGGCTTTCAC-TCTTGTGCAGG 1267 |||||||| |||||||||||||| ||||||||| | |||||||||| || | |||||| Sbjct 1460 GGTGGTGCAACTACCTCTGGTTT---GACATCAAG-CTTGGCTTTCACTTC-TATGCAGG 1514 Query 1268 GAATAGAGTTGTGCAATCCTCA--A-GCGATAGGATTAGGCAGTGGGAG-TCAAAGCAGT 1323 |||||||||||||||||||||| | || |||||||||| |||||| | |||||||| Sbjct 1515 GAATAGAGTTGTGCAATCCTCAGCAAGCTTTAGGATTAGGAAGTGGG-GCTCAAAGCA-- 1571 Query 1324 TACTTCTCAGAGTCAGGAACTTTCTCCAAGTTCAAGAAGATTTAA 1368 |||||||||||||||||| ||||| ||| | |||||||| ||| Sbjct 1572 --CTTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATCTAA 1614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67369131390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5