BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331322
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 878 0.0
AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 874 0.0
> AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein
binding region-containing protein | chr1:22192773-22195400
FORWARD LENGTH=1819
Length=1819
Score = 878 bits (475), Expect = 0.0
Identities = 791/943 (84%), Gaps = 24/943 (3%)
Strand=Plus/Plus
Query 222 TGATCCTGAATACAAACTAATCGTAGATTGCAATCAGCTGTCAGTTGATATTGAGAACGA 281
||||||||| || || || || || ||||| |||||||| || || ||||||||||| ||
Sbjct 405 TGATCCTGAGTATAAGCTTATTGTGGATTGTAATCAGCTTTCGGTCGATATTGAGAATGA 464
Query 282 GATAGTCATCGTCCACAACTTTATCCGCGACAAGTACGGA-CGTAAGTTCCAAGAGCTTG 340
|| || || ||||||||||||||| ||||||||| | | |||||| ||||||||||
Sbjct 465 AATCGTTATTGTCCACAACTTTATCAAAGACAAGTAC-AAGCTTAAGTTTCAAGAGCTTG 523
Query 341 AGTCGCTAATACATGACCCAATCGATTATGCCCGTGTTGTGaaaaaaaTTGGCAATGAGA 400
||||| | | ||| |||| || || ||||| |||||||||| || ||||| |||||||
Sbjct 524 AGTCGTTGGTTCATCACCCTATTGACTATGCATGTGTTGTGAAGAAGATTGGGAATGAGA 583
Query 401 CAGATTTAACCCTTGTTAATCTGGAAGACCTTCTTCTTCTTAAACCAGCGACTATTAT-T 459
| ||||| | |||||| |||| | |||||||||| ||| |||| | ||| ||
Sbjct 584 CGGATTTGGCTCTTGTTGATCTCGCTGACCTTCTTC--CTT----CAGCTATTATCATGG 637
Query 460 TCTGTTTCACTTACTGCTTTAACCACGAAAGGGAATCCATTGCCAGATGATATCCTACAA 519
| ||||||| ||||||||||||| |||||||||| | || ||||||| ||| | | |||
Sbjct 638 T-TGTTTCAGTTACTGCTTTAACTACGAAAGGGAGTGCACTGCCAGAGGATGTTTTGCAA 696
Query 520 AAGACGTTAGACGCTTGTGATCGGGCTCTTA-ATCTTGATTCCGCAAGGAAGAAGGTTCT 578
||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 697 AAGGTGTTAGAGGCTTGTGATCGGGCT-TTAGATCTTGATTCCGCAAGGAAGAAGGTCCT 755
Query 579 TGACTTTCTTGAAAGTAAGATGGGATATATCGCACCAAATCTTTCTGCCATTGTCGGGAG 638
||| ||| |||||||||||||||||| ||| ||||| ||||||||||| ||||| |||||
Sbjct 756 TGAGTTTGTTGAAAGTAAGATGGGATCTATTGCACCTAATCTTTCTGCTATTGTTGGGAG 815
Query 639 CGCTGTTGCAGCCAAGCTCATGGGAACTGCTGGAGGTTTAACGGCACTTGCAAAAATGCC 698
|||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 816 TGCTGTTGCAGCCAAACTCATGGGGACTGCTGGAGGTTTGTCAGCACTTGCTAAAATGCC 875
Query 699 TGCCTGTAATGTTCTAGTACTTGGCCACAAGAGGAAGAACCTTGAC-GGATTCTCTACTG 757
||| |||||||||| ||| ||||||||||||||||||||||||| | || || ||| |||
Sbjct 876 TGCGTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTG-CTGGGTTTTCTTCTG 934
Query 758 CAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTTCAAAGCACGCCTC 817
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 935 CAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTACCAAAGCACGCCTC 994
Query 818 CTGGACTTC-GAATGCGCGCTAGCAGGCTCTTGGCTTCAAAATCGACTTTGGCGGCAAGA 876
||||||||| | | |||||| |||||||| ||||| ||||||| |||||||| ||||||
Sbjct 995 CTGGACTTCAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCAAGA 1053
Query 877 GTTGACGCTACTAGAGGAGATGCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGCAAAT 935
||||| ||||||||||| ||| | | | || | || || |||||||| |||||| | ||
Sbjct 1054 GTTGATGCTACTAGAGGGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGAT 1112
Query 936 CCGCAAGAATATTGACAAGTGGCAAGAACGTCCTCCTGGAA-AGCAACCTACGCCACTTC 994
||| ||||| ||||| || |||||||||| |||||||| || | || |||| ||||||||
Sbjct 1113 CCGTAAGAAGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGA-CAGCCTAAGCCACTTC 1171
Query 995 CTGTTCCTTATTCTGAGCCTAAAAAGAA-AAGGGGTGGTCGCCGTCTAAGAAAAACGAAA 1053
|||||||| ||||||| || || || || |||||||||||||||||||||||||| ||||
Sbjct 1172 CTGTTCCTGATTCTGAACCGAAGAA-AAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAA 1230
Query 1054 GAAAGGTATCAAGTGACAGACATAAGGAAGTTAGCCAATAGGATGGCGTTTGGTACACCC 1113
|||||||||||||| ||||| || |||||| | ||||| || |||||||||||||||||
Sbjct 1231 GAAAGGTATCAAGTAACAGATATGAGGAAGCTGGCCAACAGAATGGCGTTTGGTACACCT 1290
Query 1114 GAAGAGAGCTCTCTGGGTGATGGA-TATGGTGATGGATATGGA 1155
||||||||||| || ||||||||| || || || || ||||||
Sbjct 1291 GAAGAGAGCTCCCTCGGTGATGGACTA-GGAGAAGGTTATGGA 1332
Score = 183 bits (99), Expect = 3e-45
Identities = 142/162 (88%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 1210 GGTGGTGCCACTACCTCTGGTTTGAGGACATCAAGTCTGGCTTTCACTCTTGTGCAGGGA 1269
|||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||
Sbjct 1438 GGTGGTGCGACTACCTCTGGTTT---GACATCGAGCCTGGCTTTCACTCCTGTGCAGGGA 1494
Query 1270 ATAGAGTTGTGCAATCCTCA--AG-CGATAGGATTAGGCAGTGGGAGTCAAAGCAGTTAC 1326
|||||||||||||||||||| || | |||||||||| ||||||| |||||||| ||||
Sbjct 1495 ATAGAGTTGTGCAATCCTCAGCAGGCTTTAGGATTAGGAAGTGGGACTCAAAGCACTTAC 1554
Query 1327 TTCTCAGAGTCAGGAACTTTCTCCAAGTTCAAGAAGATTTAA 1368
||||||||||||||||| ||||| ||| | |||||||| |||
Sbjct 1555 TTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATCTAA 1596
> AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing
ribonucleoprotein, similar to U4/U6 snRNP-associated 61
kDa protein (Homo sapiens) GI:18249847; contains Pfam profile
PF01798: Putative snoRNA binding domain; blastp match of
63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010
putative U4/U6 snRNP-associated 61 kDa protein
{Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048
REVERSE LENGTH=1812
Length=1812
Score = 874 bits (473), Expect = 0.0
Identities = 893/1095 (82%), Gaps = 32/1095 (3%)
Strand=Plus/Plus
Query 74 AGGAGGAGGAGGATATTGACGTGGACATGGCAG-TGTCAGAAACCCTTAACTATGATGAT 132
||||||| || ||| | || |||| ||||| | | | ||| || |||||||||||||||
Sbjct 279 AGGAGGAAGAAGATGTGGATATGGATATGGCGGAT-TTAGAGACACTTAACTATGATGAT 337
Query 133 CTCGAGAGCGTTTCTAAGCTACAGAAAACACAGAGATACGCTGATATAATGAAGAAAGTG 192
||||| || ||||||||||| ||||| || |||||||| | |||||| ||| | |||||
Sbjct 338 CTCGATAGTGTTTCTAAGCTTCAGAAGACTCAGAGATATGATGATATTATGCACAAAGTA 397
Query 193 GAACAGGCTC-T-CGAAGAGGTGATAGGAACTGATCCTGAATACAAACTAATCGTAGATT 250
|| |||||| | ||| || | | | | ||||| ||| || || || || || ||||
Sbjct 398 GAGGAGGCTCTTGGGAA-AGAT--TCTG-A-TGATCATGAGTATAAGCTTATTGTGGATT 452
Query 251 GCAATCAGCTGTCAGTTGATATTGAGAACGAGATAGTCATCGTCCACAACTTTATCCGCG 310
| ||| |||| || |||||||||||| | || || || || ||||||||||||||| |
Sbjct 453 GTAATAAGCTTTCGGTTGATATTGAGGATGAAATCGTTATTGTCCACAACTTTATCAAAG 512
Query 311 ACAAGTACGGA-CGTAAGTTCCAAGAGCTTGAGTCGCTAATACATGACCCAATCGATTAT 369
| |||||| | | || ||| ||||||||||||||| | | ||| |||| || || |||
Sbjct 513 AAAAGTAC-AAGCTTAGGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTAT 571
Query 370 GCCCGTGTTGTGaaaaaaaTTGGCAATGAGACAGATTTAACCCTTGTTAATCTGGAAGAC 429
|| ||||||| || || |||||||||||||| ||||| || |||||| || | | |
Sbjct 572 GCATGTGTTGTCAAGAAGATTGGCAATGAGACGGATTTGACTCTTGTTGATTTTGCTG-G 630
Query 430 CTTCTTCTTCTTAAACCAGCGACTATTATTTCTGTTTCACTTACTGCTTTAACCACGAAA 489
| ||| ||||| ||||| | ||| || || ||||| ||||||||| ||| ||||||
Sbjct 631 C--CTTGATCTTACTCCAGCTATTATCATGGCTATTTCAGTTACTGCTTCAACTACGAAA 688
Query 490 GGGAATCCATTGCCAGATGATATCCTA-CAAAAGACGTTAGACGCTTGTGATCGGGCTCT 548
|||| | || ||||||| ||| | || |||||| |||||| ||||||||||||| | |
Sbjct 689 GGGAGTGCACTGCCAGAGGATGT-TTAGCAAAAGGTGTTAGAGGCTTGTGATCGGGAT-T 746
Query 549 TA-ATCTTGATTCCGCAAGGAAGAAGGTTCTTGACTTTCTTGAAAGTAAGATGGGATATA 607
|| |||||||||||||||| |||||||| ||||| ||| |||||||||||||||| | ||
Sbjct 747 TAGATCTTGATTCCGCAAGAAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGTTCTA 806
Query 608 TCGCACCAAATCTTTCTGCCATTGTCGGGAGCGCTGTTGCAGCCAAGCTCATGGGAACTG 667
| || || |||||||| |||||||| ||||| |||||||||||||| |||||||| || |
Sbjct 807 TTGCTCCTAATCTTTCCGCCATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACAG 866
Query 668 CTGGAGGTTTAACGGCACTTGCAAAAATGCCTGCCTGTAATGTTCTAGTACTTGGCCACA 727
|||||||||| | |||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct 867 CTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCACA 926
Query 728 AGAGGAAGAACCTTGACGGATTCTCTACTGCAACGTCACAGTCCCGTGTGGGTTATCTGG 787
||||||||||||||| || || ||| |||||||||| ||||||||||||||||||||||
Sbjct 927 AGAGGAAGAACCTTGTTGGGTTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTATCTGG 986
Query 788 AGCAGACAGAGATTTTTCAAAGCACGCCTCCTGGACTTCGAATGC--GCGCTAGCAGGCT 845
|||||||||||||||| ||||||||||||||||||||| || || ||||| |||||||
Sbjct 987 AGCAGACAGAGATTTTCCAAAGCACGCCTCCTGGACTT-GAG-GCTCGCGCTGGCAGGCT 1044
Query 846 CTTGGCTTCAAAATCGACTTTGGCGGCAAGAGTTGACGCTACTAGAGGAG-ATGCATCT- 903
| ||||| ||||||| |||||||| || |||||||| |||||||||| || || | | |
Sbjct 1045 CGTGGCTGCAAAATCAACTTTGGCAGCTAGAGTTGATGCTACTAGAG-AGGATCCGT-TA 1102
Query 904 GGAACAAACGGGAAAGCTTTGAGGGAGCAAATCCGCAAGAATATTGACAAGTGGCAAGAA 963
|| | || || |||||||| |||||| | ||||| ||||| ||||||||||||||||||
Sbjct 1103 GGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAAGAAGATTGACAAGTGGCAAGAA 1162
Query 964 CGTCCTCCTGGAAAGCAACCTACGCCACTTCCTGTTCCTTATTCTGAGCCTAAAAAGAA- 1022
| |||||||| || ||| |||| |||||||||| ||||| |||||||||| || || ||
Sbjct 1163 CCTCCTCCTGCAAGGCAGCCTAAGCCACTTCCTATTCCTCATTCTGAGCCGAAGAA-AAG 1221
Query 1023 AAGGGGTGGTCGCCGTCTAAGAAAAAC-GAAAGAAAGGTATCAAGTGACAGACATAAGGA 1081
||||||||||||||||||||||||| | ||||| |||||||||||| ||||| || ||||
Sbjct 1222 AAGGGGTGGTCGCCGTCTAAGAAAA-CTGAAAGCAAGGTATCAAGTAACAGATATGAGGA 1280
Query 1082 AGTTAGCCAATAGGATGGCGTTTGGTACACCCGAAGAGAGCTCTCTGGGTGATGGA-TAT 1140
|| | ||||| |||| ||| ||||||||||| ||||||||||| || ||||||||| ||
Sbjct 1281 AGCTGGCCAACAGGACGGCCTTTGGTACACCTGAAGAGAGCTCCCTCGGTGATGGACTA- 1339
Query 1141 GGTGATGGATATGGA 1155
|| || || ||||||
Sbjct 1340 GGAGAAGGTTATGGA 1354
Score = 147 bits (79), Expect = 4e-34
Identities = 139/165 (84%), Gaps = 16/165 (10%)
Strand=Plus/Plus
Query 1210 GGTGGTGCCACTACCTCTGGTTTGAGGACATCAAGTC-TGGCTTTCAC-TCTTGTGCAGG 1267
|||||||| |||||||||||||| ||||||||| | |||||||||| || | ||||||
Sbjct 1460 GGTGGTGCAACTACCTCTGGTTT---GACATCAAG-CTTGGCTTTCACTTC-TATGCAGG 1514
Query 1268 GAATAGAGTTGTGCAATCCTCA--A-GCGATAGGATTAGGCAGTGGGAG-TCAAAGCAGT 1323
|||||||||||||||||||||| | || |||||||||| |||||| | ||||||||
Sbjct 1515 GAATAGAGTTGTGCAATCCTCAGCAAGCTTTAGGATTAGGAAGTGGG-GCTCAAAGCA-- 1571
Query 1324 TACTTCTCAGAGTCAGGAACTTTCTCCAAGTTCAAGAAGATTTAA 1368
|||||||||||||||||| ||||| ||| | |||||||| |||
Sbjct 1572 --CTTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATCTAA 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5