BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331329
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related |... 1064 0.0
> AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related
| chr5:19866231-19868365 FORWARD LENGTH=1187
Length=1187
Score = 1064 bits (576), Expect = 0.0
Identities = 635/664 (96%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCG 293
Query 61 GACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAAATTCTTCAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 GACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAGATTCTTCAG 353
Query 121 TACGAAGGAGCTCTTGTCCAAAGAGCCAAAGAACAGATCGAACTGGTGGAAGAAACAATT 180
|||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct 354 TACGAAGGAGCTCTTGTCGATAGAGCCAAAGAACAGATCGAATTAGTGGAAGAAACAATT 413
Query 181 GACGATTACGTGGAAAATGGCATAGACCCTTTGGTGGTGTCTCTTTATCAGATGGATTTA 240
|| ||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 414 GAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATATCAGATGGATTTG 473
Query 241 GACAGAACCCAGTTTCTACTCAGATCCTATCTCAGGGTTAGGCTCCTCAAGATAGAGAAG 300
|||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 474 GACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTCAAGATAGAGAAG 533
Query 301 TTTATGTTCCACAACCTTAAGTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAG 360
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTATGTTCCACAACCTCAACTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAA 593
Query 361 GTGTTTGCTACAAGGTGTGCTGATGATTTAGCAAAGCATTTCGAAGAGACTGTACTGCTT 420
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 594 GTGTTTGCTACCAGGTGTGCTGATGATTTGGCAAAGCATTTCGAAGAGACTGTACTGCTT 653
Query 421 AAGTTGCCTGAGAATTATCAGTCTGTCCTCAAGCAATCCCTTATAAGTGAAGTGGATGAT 480
||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 654 AAGCTGCCCGAGAATTATCAGTCGGTTCTCAAGCAATCCCTTATAAGTGAAGTGGATGAT 713
Query 481 ATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 773
Query 541 CTCAATCTATACGATGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTCAATCTATACGAAGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTC 833
Query 601 TACTTCATACGTTACAAGATTGTAAAA-GGAGCAATCGAATCAGGCCAAATTGACTTGAT 659
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 834 TACTTCATACGTTACAAGATTGTAAAAAGG-GCAATCGAATCTGGCCAAATTGACTTGAT 892
Query 660 CTGA 663
||||
Sbjct 893 CTGA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5