BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331346
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49340.1 | Symbols: TBL4 | TRICHOME BIREFRINGENCE-LIKE 4 | c... 2156 0.0
> AT5G49340.1 | Symbols: TBL4 | TRICHOME BIREFRINGENCE-LIKE 4 |
chr5:20007348-20009038 REVERSE LENGTH=1374
Length=1374
Score = 2156 bits (1167), Expect = 0.0
Identities = 1311/1381 (95%), Gaps = 8/1381 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATCTAAAGAATCTCTTCCTCATCACGAAACATCCATCAACAACACAAAtcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGATCTAAAGAATCTCTTCCTCATCACGAAACATCCATCAACAACACAGATCTTC 60
Query 61 tttacgtctctcttcttcatctctctcttcctcctctcatcttcttctctatccgacttc 120
| ||||||||||||||| | ||||||||||||||||| ||||||||||| || || |||
Sbjct 61 CTAACGTCTCTCTTCTTCCTTTCTCTCTTCCTCCTCTCCTCTTCTTCTCTCTCAGATTTC 120
Query 121 tctccatcgctcatcgtctctagcttcacctctcgtcttctcacagcagcaaacttcttc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCATCACTCATCGTCTCTAGCTTCACCTCTCGTCTTCTCACAGCAGCAAACTTCTTC 180
Query 181 tcttctccttcttcttattcttcttcttcctctgcttcAGACACAACTATGTTTCTCTCC 240
||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 181 TCTTCTCCTTCTTCTTA------TACTTCCTCTGCTTCAGATACAACTATGTTTCTCTCT 234
Query 241 TCTGTTTCTCCCAGAAGAATCAACGAGCCAAAGATTGATTCGGAGACTAAAGAACTCACT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 235 TCTGTTTCTCCCAGAAGAATCAACGAGCCAAAGATTGATTCGGAGACCAAAGAACTCGCT 294
Query 301 TCTTGCGACATTTTTGATGGAACTTGGGTCTTCGACGATTCTGAACCGGTTTATCTTCCT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 295 TCTTGCGACATTTTTGATGGAACTTGGGTCTTTGACGATTCTGAACCGGTTTATCTTCCT 354
Query 361 GGTTATTGTCCTTTCATTGAAGATAAATTCAATTGCTTCAAAAATGGTCGACCTGATTCG 420
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 355 GGTTATTGTCCTTTCGTTGAAGATAAATTCAACTGCTTCAAGAATGGTCGACCTGATTCG 414
Query 421 GGTTTTCTCCGTCATCGATGGCAACCTCATGGATGCTCGATTCCAAGATTCGATGGGAAG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGGTTTCTCCGTCATCGATGGCAACCTCATGGATGCTCGATTCCAAGATTCGATGGGAAG 474
Query 481 AAGATGCTGAAGATTCTGAGAGGGAAAAGAGTTGTTTTTGTTGGAGATTCATTGAATAGA 540
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 475 AAGATGTTGAAGATGCTGAGAGGGAAAAGAGTTGTTTTTGTTGGTGATTCATTGAATAGA 534
Query 541 AACATGTGGGAGTCTCTGGTTTGTTCACTTAGGTCAACATTGGAAGACAAAAACAGAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AACATGTGGGAGTCTCTGGTTTGTTCACTTAGGTCAACATTGGAAGACAAAAACAGAGTT 594
Query 601 TCTAGGGTT-TCTGGAAAACAGAGTAATCTTCATAACGAAGGCTTTTACGGTTTCAGATT 659
|||| | || | |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 595 TCTAAGATTAT-TGGAAAACAGAGTAATCTTCCTAACGAAGGCTTTTACGGTTTCAGGTT 653
Query 660 CAAAGACTTTGAATGCTCTATTGACTTCATCAAATCACCATTCCTCGTTCAAGAATCAGA 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CAATGACTTTGAATGCTCTATTGACTTCATCAAATCACCATTCCTCGTTCAAGAATCAGA 713
Query 720 AGTTTTAGATGTATACGGCAAGAGAAGAGAGACACTGAGACTCGATATGATTCAACGATC 779
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 AGTTGTAGATGTATACGGGAAGAGAAGAGAGACACTGAGACTCGATATGATTCAAAGATC 773
Query 780 GATTAAGAAGATACACAAAAACGCAGACATTGTTATATTTAACACTGGTCACTGGTGGAC 839
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GATGACGAAGATATACAAAAACGCAGACATTGTTATATTTAACACTGGTCACTGGTGGAC 833
Query 840 TCACCAGAAAACCTATGAAGGGAAAGGTTATTTCCAGGAAGGAAATCGAGTTTACGAAAG 899
||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 834 TCACCAGAAAACCTACGAAGGGAAAGGTTATTACCAGGAAGGAAATAGGGTTTACGAAAG 893
Query 900 ATTAGAAGTGAAAGAAGCTTACACAAAAGCTCTTCATACATGGGCTGATTGGGTTGATTC 959
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 894 ATTAGAAGTGAAAGAAGCTTATACAAAAGCTATTCATACATGGGCTGACTGGGTTGATTC 953
Query 960 CAGTATCAACAGTACTAAAACCAGAGTCTTCTTCGTTGGTTATTCCTCTTCACATTTTAG 1019
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CAATATCAACAGTACTAAAACCAGAGTCTTCTTCGTTGGTTATTCCTCTTCACATTTTAG 1013
Query 1020 AAAAGGGGCGTGGAACAACGGAGGACAATGCGATGGAGAAACAAGACCGATACAGAACGA 1079
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAAAGGGGCGTGGAATAGCGGAGGACAATGCGATGGAGAAACAAGACCGATACAGAACGA 1073
Query 1080 GACGTACACCGGAGTGTATCCATGGATGATGAAAGTTGTGGAATCGGTGATCTCGGATAT 1139
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1074 AACGTACACAGGAGTGTATCCATGGATGATGAAAGTTGTAGAATCTGTGATCTCGGAAAT 1133
Query 1140 GAAAACGCCTGTGTTTTACATGAATATTACGAAGATGACTTGGTACAGAACCGATGGTCA 1199
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1134 GAAAACGCCTGTGTTTTACATGAACATTACGAAGATGACTTGGTACCGAACAGATGGTCA 1193
Query 1200 TCCGTCGATTTACAGACAACCTGCCGACCCCCGAGGAAGTACTCCTGCAGCTGGAATGTT 1259
||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||
Sbjct 1194 TCCGTCGGTTTACAGACAGCCCGCCGACCCCCGAGGAACTTCTCCTGCAGCGGGAATGTA 1253
Query 1260 CCAAGATTGTAGCCATTGGTGCTTACCTGGAGTTCCTGATTCATGGAATCAGCTTCTCTA 1319
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1254 CCAAGATTGTAGTCATTGGTGCTTACCTGGAGTTCCTGATTCATGGAACCAGCTTCTCTA 1313
Query 1320 CGCTACTTTGCTAGTTTCACATGGTTCCTTGCCTGACAAGTCACTTGGAAGTCTCTTGTA 1379
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CGCTACTCTGCTAGTTTCACATGGTTCCTTGCCTGACAAGTCACTTGGAAGTCTCTTGTA 1373
Query 1380 A 1380
|
Sbjct 1374 A 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5