BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331355

Length=1167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17560.1 | Symbols:  | F-box and associated interaction doma...   246    3e-64
  AT3G13680.1 | Symbols:  | F-box and associated interaction doma...  58.4    2e-07


> AT3G17560.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:6006762-6008003 FORWARD LENGTH=1242
Length=1242

 Score =  246 bits (133),  Expect = 3e-64
 Identities = 291/361 (81%), Gaps = 35/361 (10%)
 Strand=Plus/Plus

Query  808   ATGGCTCTATCGGTTGTTAGAGAAGAACATCTTTCGTTGTTATTTCAGAGT-GTTGTGAC  866
             |||||||| || ||||||||||||||||||||||||||||||| ||||||| |  | |||
Sbjct  892   ATGGCTCTCTCAGTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGC-GAGAC  950

Query  867   ACAAAAGATGGAAATATGGATAACCAATGAGATTGAGACCACATCTGTGTCATGGAACAA  926
              | |||| ||||||||||||| ||||| |||||||| || |||| |||||||||||| ||
Sbjct  951   TCTAAAGGTGGAAATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAA  1010

Query  927   GTTCTTAACAGTGGATTTTA-AACCTCATC--C-TCAT------ATGTTTTCGCGTAGCA  976
             |||||||||||||||||| | |||||||||  | ||||      ||||||||| || |||
Sbjct  1011  GTTCTTAACAGTGGATTT-AGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCA  1069

Query  977   TGAGTTTTTTCATTGATGAGGAGAAGAAAGTTGCCGTGTGTTGTGAGAAAGACCAAGAGA  1036
             ||||||| ||||| || |||||||||||||||||||||||||||||      | | ||||
Sbjct  1070  TGAGTTTCTTCATCGACGAGGAGAAGAAAGTTGCCGTGTGTTGTGA------C-A-GAGA  1121

Query  1037  AGAAGATATTCAACAAGGTATACATTGTTGGAGAAGATGAATTCAAAGTATCTCCCGGTT  1096
                   ||   | ||||||| || |||||||||||||||||| || ||||||| | ||||
Sbjct  1122  ------TA---A-CAAGGTACACGTTGTTGGAGAAGATGAATACAGAGTATCTTCTGGTT  1171

Query  1097  TTGGTTTTATTGATTGTAGA-GGCATAT-ATAGTTGCCCAACTATGTTTGGTTATGTTCC  1154
             ||  |||| | |||| | || ||||||  || ||||||  ||| | ||||||||||||||
Sbjct  1172  TTTATTTTCTAGATTTT-GAAGGCATAACAT-GTTGCCTGACTGTCTTTGGTTATGTTCC  1229

Query  1155  A  1155
             |
Sbjct  1230  A  1230


> AT3G13680.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433

 Score = 58.4 bits (31),  Expect = 2e-07
 Identities = 38/41 (93%), Gaps = 1/41 (2%)
 Strand=Plus/Plus

Query  978   GAGTTTTTTCATTGATGAGGAGAAGAAAGTTGCCGTGTGTT  1018
             ||| ||||||||||||||||||||||||||||| ||| |||
Sbjct  924   GAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCTGTG-GTT  963



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57278821845


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5