BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331361

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49540.1 | Symbols:  | Rab5-interacting family protein | chr...   492    1e-138


> AT5G49540.1 | Symbols:  | Rab5-interacting family protein | chr5:20104481-20106122 
REVERSE LENGTH=822
Length=822

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 287/297 (97%), Gaps = 2/297 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTCATCTGAGAAGAGATCAAAGGATATCATGAGTGACATTCCAACTTTCAGTGCA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  155  ATGGGTTCATCTGAGAAGAGATCAAAGGATATCATGAGTGACATACCAACTTTCAGTGCA  214

Query  61   GAGAATTTGCAGAACAATTTGAAAGTTATTCAAAACAGCCGGACATTTCTGTCTATCATC  120
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| 
Sbjct  215  GAGAATTTGCAGAACAATTTGAAAGTCATTCAAAACAGCCGGACGTTTCTGTCTATCATA  274

Query  121  GCTGGTGTTCTT-GCAGGAATAATTGGATTCAATGGCTTGACTGGTTTTGTATTTTACTT  179
            ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  275  GCTGGTG-TCTTAGCAGGAATAATTGGATTCAATGGCTTGATTGGTTTTGTATTTTACTT  333

Query  180  TGTGGTGATGTTGATCACATCAGTTGGGCTCATGGCTAAGGCAGGATTCTCAGCTGACTT  239
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  334  TGTGGTGATGTTGATCACATCTGTTGGGCTCATGGCTAAGGCAGGATTCTCAGCTGACTT  393

Query  240  GTACTTTGATTCGTGGAATCGGGTCCTTTTTGACGGCTTTCTTGGTGGCCTTATGTC  296
            |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  394  GTACTTTGATTCGTGGAATCGGGTTCTTTTTGACGGTTTTCTTGGTGGCCTTATGTC  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5