BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331394
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49920.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 1243 0.0
> AT5G49920.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr5:20306409-20307943 REVERSE LENGTH=1455
Length=1455
Score = 1243 bits (673), Expect = 0.0
Identities = 810/873 (93%), Gaps = 21/873 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAGAGATCGCCGAGTAGTAAGGTGAAGTTCATGTGCAGTTTTGGAGGCAGA 60
|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 361 ATGGCGGAGGAGAGATCGCC--G-AGTAAGGTGAAGTTCATGTGCAGTTTTGGCGGCAGA 417
Query 61 ATCCTCCCTAGACCATCCGACGGTGTTCTTAAATATGTCGGCGGTGAGACTCGCGTCATT 120
||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||| ||
Sbjct 418 ATCCTCCCTAGACCATCGGACAGTGTTCTCAAATATGTCGGCGGAGAGACTCGCGTCGTT 477
Query 121 GCTGTATCTCCCGACATCTCCTTCTCCGAACTCGTGAAGAAACTTGCCGCAATCACAGAG 180
||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 478 GCTGTATCTCCTGACATCTCCTTCTCCGAACTCATGAAGAAACTTACGGCAATCACAGAG 537
Query 181 AACGATATCGTGCTCAAATACCAGATCATTCCAGAAGATCTTGATGCATTAGTGTCCGTT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 538 AACGATATTGTGCTCAAATACCAGATCATTCCAGAAGATCTTGATGCATTAGTTTCTGTA 597
Query 241 AAGTCTGATGAAGATGTGAAACACATGATAGAGGAATATAACCGTCATGAAACCCCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 AAGTCTGATGAAGATGTGAAACACATGATAGAGGAATATAACCGTCATGAAACACCCAAG 657
Query 301 CTCAGAACCTTCTTGTTTCCTGCAAACCCAGTGGTTCTTGAGAATCAGTTAGGCCCGATC 360
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 658 CTCAGAACTTTCTTGTTTCCTGCAAACCCAGTGGTTCTTGAGAGTCAGTTAGGCCCCATC 717
Query 361 GAGCCACAAACCATAGAGCAACGCTATATCGAAGCCATCAATGGCATTCTTCGCACATCC 420
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 718 GAGCCACAAACCATAGAGCAACGCTACATTGAAGCCATCAATGGCATTCTTCGCACATCC 777
Query 421 AAGAGTGCTACTGCTCTTCGTGCTCCCATCAAAACACGACCTTCCTTCACCGTCTCTACT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGAGTGCTACTGCTCTTCGTGCTCCCATCAAAACACGACCTTCCTTCACCGTCTCTACT 837
Query 481 TGCTCCTCTCCCAAATCAGAATCATCACCTGATGGATACAGTCACGAGCTGCCAGAAACG 540
|||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||
Sbjct 838 TGCTCCTCTCCCAAATCAGAATCA-C-C-TGATGGATACAGTCACGAGCCGCCAGAAACG 894
Query 541 AGTTTTCAGAATAACTACCAATTGAGCCGGCTTTACCCAATGCATAAAGTACATAGCAGT 600
||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 895 AGTTTTCAGAACAACTACCAATTGAGCCGGCTTTACCCAATGCATAGAGTGCATAGCAGT 954
Query 601 CCCAACATCTCACAGCAGCTGCAGCCATACAGCCACTTCCACAAC------------GCA 648
|||||||||||||| |||||||||||| ||||||||| ||||||| |||
Sbjct 955 CCCAACATCTCACACCAGCTGCAGCCACACAGCCACTACCACAACCACAACCACAATGCA 1014
Query 649 TACTTGCAGCCTCCTA--A-CTACTTAACCTGTAGGCCGCGACCACCAACTCCATTAGAC 705
||| |||||||||||| | ||||||||| |||||||| |||| |||||| || |||||
Sbjct 1015 TACGTGCAGCCTCCTACTAACTACTTAACGTGTAGGCCACGACTACCAACACCGTTAGAA 1074
Query 706 ATCCCCAGAGGCATCGGTTGGGACCAATCATACACAACCACACATAACTCAGGTTGTGGT 765
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1075 ATTCCCAGAGGCATCGGTTGGGACCAATCATACACAACCACACATAACTCAGGTGGCGGT 1134
Query 766 AATGGTAAGTGCTGGTGCAATGATGACCGCAGGTTCTGGGGAAGAGCAAGCAGCGTTCCT 825
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AATGGCAAGTACGGGTGCAATGATGACCGCAGGTTCTGGGGAAGAGCAAGCAGCGTTCCT 1194
Query 826 CAAAGTCCTAGGAACCACGGACTCCGCCTCTGA 858
||||||||||||||||| |||||||||||||||
Sbjct 1195 CAAAGTCCTAGGAACCATGGACTCCGCCTCTGA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5