BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331398
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superf... 183 2e-45
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 113 3e-24
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 69.4 6e-11
> AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380
Score = 183 bits (99), Expect = 2e-45
Identities = 318/420 (76%), Gaps = 29/420 (7%)
Strand=Plus/Plus
Query 623 ATGGTTTGGCTTACATACCCAAGGAAGGACA-ATGGGAAA-GAT--TATGGGGTCA--GA 676
|||||||| ||||| |||||||||||| | ||||||| ||| || ||| || ||
Sbjct 804 ATGGTTTGATTTACAAACCCAAGGAAGG-TAGGTGGGAAAGGATGAAAT-GGGACATGGA 861
Query 677 AATCGAGTTGGGGATGGTTTTCTTTTTGCG-TGATTGAAAATGT-ATTGTACCATTACCG 734
|| | |||||| ||||| ||||| ||||| || |||| || || || ||| |||||
Sbjct 862 TATAG-GTTGGGTATGGTATTCTTATTGCGTTG-TTGAGAACGTGCTT-TACTATTACTA 918
Query 735 TTCTGGAGTGTTCAAATGGCATGACTCCAAGGGAGGATGT-TGGATAGAGATGAAGGGTT 793
| ||||| ||||||||| ||||| | | || | || | |||| || | ||||||
Sbjct 919 TAAGGGAGTCTTCAAATGGTATGACACTATGGCAAGA-CTCTGGAGGGATCTCAAGGGTG 977
Query 794 TGACAGGATTGCCTAAGTTTGAAAGTTATGGTTGTGTTCAGTTGGCGGATTATGGTGGAA 853
||| |||| | || | ||||| || || || ||| | ||||||||||||||||||
Sbjct 978 TGAAAGGACTCCCCAGGTTTGCCAG--AT-GTGGTGGAAAAATGGCGGATTATGGTGGAA 1034
Query 854 AGATGGCGGTTTTAT-GGTCTGAGCTTGTG-CTTACC-A--ATGGCTGTAAGAACAAGAT 908
||||||||||||| | || | || ||||| ||| || | |||| ||||||||||||||
Sbjct 1035 AGATGGCGGTTTTCTGGGAC-AAGATTGTGACTT-CCGATGATGGATGTAAGAACAAGAT 1092
Query 909 GATTTGGTGTGCGGTAATTGCGCTTGAGAGGCGTAATGGTGAAGAGATTTGGGGGAAGGT 968
||||| |||||| || ||||||||||| ||||| || | ||||||||||||||||||||
Sbjct 1093 GATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGCGAAGAGATTTGGGGGAAGGT 1152
Query 969 CGAGTGGTGTGACG-AGGTGCTAACGGTCCCCAAT-TCATCTAAATTGGAGTATGCTCTT 1026
||||||| ||||| || | || || || ||| | |||| | || | | ||||||||||
Sbjct 1153 CGAGTGGCATGACGCAGTT-CTTACAGTTCCCT-TGTCATATGAAGTCGTGTATGCTCTT 1210
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 113 bits (61), Expect = 3e-24
Identities = 182/239 (76%), Gaps = 13/239 (5%)
Strand=Plus/Plus
Query 782 AGATGA-AGGGTTT-GACAGGATTGCCTAAGTTTGAAAGTTATGGTTGTGTTCAGTTGGC 839
|||| | ||||||| || ||| | |||||||||| || ||| || |||| | || ||
Sbjct 910 AGATTAGAGGGTTTAGA-AGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGC 968
Query 840 GGATTATGGTGGAAAGATGGCGGTTTTAT-GGTCTGAGCT-TGT-GCTTACCAA-TGGCT 895
||| ||||| || ||| ||| ||||| | || | || | ||| || | ||| ||| |
Sbjct 969 GGAATATGGCGGGAAGCTGGTTGTTTTGTGGGAC-AAG-TATGTAGC-T-GCAAGTGGGT 1024
Query 896 GTAAGAACAAGATGATTTGGTGTGCGGTA-ATTGCGCTTGAGAGGCGTAATGGTGAAGAG 954
|||| | ||||||||||||||||| | | ||| ||||||| | ||| || ||||||||
Sbjct 1025 ATAAGGAGAAGATGATTTGGTGTGCAG-AGATTTCGCTTGAAAAGCGCAACAGTGAAGAG 1083
Query 955 ATTTGGGGGAAGGTCGAGTGGTGTGACGAGGTGCTAACGGTCCCCAATTCATCTAAATT 1013
|||||||||||||||||||||| ||| | ||| || || ||||| || || | ||||||
Sbjct 1084 ATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATT 1142
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 69.4 bits (37), Expect = 6e-11
Identities = 142/188 (76%), Gaps = 26/188 (14%)
Strand=Plus/Plus
Query 696 TTCTTTTTGCGTGATTGAA-AATGTATTGTAC--CATT-ACCGTTCTGGAGTGTTCAAAT 751
||||||||||| || | || ||||| |||| | ||| | || | |||||||||| ||
Sbjct 753 TTCTTTTTGCGAGA-TAAATAATGTTTTGTTCTATATTCATCG--C-GGAGTGTTCAGAT 808
Query 752 GGCATGACT-CCAAG-GGAGGATGTTGGATAGAGA-TGAAGGGTTTGACAGGATTGCCTA 808
|| |||| | | ||| || ||| |||| | | | |||| |||||| |||| | |||
Sbjct 809 GGTATGA-TACTAAGTTAAGAATG-TGGAGA-ATATTGAAAGGTTTGTTAGGACTACCT- 864
Query 809 AG-TT---TGA-AAGTTATGGTTGTGTTCAG-TTGGCGGATTATGGTGGAAAGATGGCGG 862
|| || ||| || ||| ||| |||| || ||||| ||||||||||||||||||||||
Sbjct 865 AGTTTACCTGAGAA--TAT-GTT-TGTT-AGATTGGCTGATTATGGTGGAAAGATGGCGG 919
Query 863 TTTTATGG 870
||||||||
Sbjct 920 TTTTATGG 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5