BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331409

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50060.1 | Symbols:  | Plant invertase/pectin methylesterase...   676    0.0  


> AT5G50060.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:20362550-20363461 FORWARD 
LENGTH=501
Length=501

 Score =  676 bits (366),  Expect = 0.0
 Identities = 457/502 (91%), Gaps = 2/502 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAGTTCTATCCGAAATTCTCTTAATATCTCCTTCAGCCTTAACATCCACAAAGTAT  60
            |||||||||||||||||||||||||| || ||| |||| | |||||| |||||||| |||
Sbjct  1    ATGGCAGTTCTATCCGAAATTCTCTTTATCTCTTCTTCGGGCTTAACCTCCACAAAATAT  60

Query  61   ATTGATGCGATATGCCAACATGTGGAAAACGGTACCTTCTGCATGCAAATGTTGAGAACC  120
            ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  61   ATTGATGCGCTATGCCAACATGTGGAAAACGGTACCTTCTGCATGCACATGTTGAGAGCC  120

Query  121  TATCCTCCCGCGGTTTCTGCCACCGACTTGTTTTCACTCGCTAACATCGTGATCAACCTC  180
            ||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||
Sbjct  121  TATCCTCCCGCGGTTACTGCCACCGATTTGTTTTCCCTGGCTAACATCGTGATCAACCTC  180

Query  181  GGCATATCCTACGCCAACAACACGGGGGGTTATGCCGCCG-AGACAGCAAAGAGAGAGCC  239
            |||||||||||||||||||||||||||| || |||||||| || | || |||| ||||||
Sbjct  181  GGCATATCCTACGCCAACAACACGGGGGCTTTTGCCGCCGAAG-CGGCTAAGAAAGAGCC  239

Query  240  TACATTGAAGGCGCAGTTCAATTCATGCCAGCATGAATATGACGGTATTCAATTGTATCT  299
             || ||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct  240  AACGTTGAAGGTGCAGTTCAAGTCATTCCAGCATGAATATGACGGTATTCAGTTGTATCT  299

Query  300  AAGAATGGCAAGGGGGGAGCTCAAGGAATCTCCAATGAGTGCAAACTATGACATTTTCCG  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  300  AAGAATGGCAAGGGGGGAGCTCAAGGAATCTCCAATGAGTGCAAACTATGACATTTTTCG  359

Query  360  TTGTACGGACATCACCATGTACGTGAAAGATTTGGTCGGGGGAAACAGAGACACCGCCTC  419
            ||||||||| ||||| |||||| |||| ||| ||||||| ||||||||||||| | ||||
Sbjct  360  TTGTACGGATATCACTATGTACCTGAAGGATGTGGTCGGAGGAAACAGAGACAACACCTC  419

Query  420  GAAAACGTTCATGGAGATGACATTGCAAATGGAAAACCTTATTGATGTCGCCATTGGAGC  479
             |||||||||||||| ||||||||||||||||| ||| |||| ||||| ||| |||||||
Sbjct  420  TAAAACGTTCATGGATATGACATTGCAAATGGAGAACATTATCGATGTTGCCCTTGGAGC  479

Query  480  GACAGTAGCTCTTGGCGGGTGA  501
             || ||||||||||||||||||
Sbjct  480  CACCGTAGCTCTTGGCGGGTGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5