BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331410

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50070.1 | Symbols:  | Plant invertase/pectin methylesterase...   843    0.0  


> AT5G50070.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:20364556-20365429 FORWARD 
LENGTH=552
Length=552

 Score =  843 bits (456),  Expect = 0.0
 Identities = 520/552 (94%), Gaps = 0/552 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTTCTTCTCATTGTTTCTTGATCGTTTCAGTGGCACTTCTATTGCAAGTTCTC  60
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTTCTTCTTCTCATTGTTTCTTGATCGTTTCAGTGGCACTTCTATTGCAAGTTCTC  60

Query  61   GTATCCCCTGTTTCGGCATTAACCTTAACCTCCACAAAATACATCGATAAACTATGCCAG  120
             |||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||
Sbjct  61   TTATCCCCTGTTTCGGCCTTAACCTTAACCTCCACAAAATACATTAATAAATTATGCCAG  120

Query  121  ATGCCATTAGTCGACAGTAAACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCT  180
            ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ATGTCATTTGTCGACAATAAACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCG  180

Query  181  GCTTCTGCCACTGGCTTGCTCCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTTCTGCCACTGGCTTGCTCCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCC  240

Query  241  CAAGCCAAGAAGTCGGCGAGTTTTGCAGATGAAGCAGCAAAAAAGGAGCCGAACTTGAAG  300
            |||||||||||||| |||||||||||| ||| |||||| ||||||||||||| |||||||
Sbjct  241  CAAGCCAAGAAGTCTGCGAGTTTTGCAAATGGAGCAGCGAAAAAGGAGCCGAGCTTGAAG  300

Query  301  ACACAGTTCCAGACGTGCCAAGAGGCCTATGAAAGTATTGGAGATTCTCTCATGAGCGCT  360
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  301  ACACAGTTCCAGACGTGCCAAGAGGCCTTTGTAAGTATTGGAGATTCTCTCATGAGCGCT  360

Query  361  CTTGAAGAACTCAAGCGCTCTCCATATGTCGCAACCTATGATGTAATGACTTGTACCGAC  420
             |||||||||||||||||  |||| || |||||||||||||||| |||||||||||||||
Sbjct  361  TTTGAAGAACTCAAGCGCGATCCACATATCGCAACCTATGATGTTATGACTTGTACCGAC  420

Query  421  CACACAAGCCAAGTGAAGAATTTGGTCGGTAAAAACAGAGACGTGGCTTCGAAGACTCTC  480
            || |||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct  421  CATACAACCCAAGTGAAGAATTTGGTCGGAAAAAACACAGATGTGGCTTCGAAGACTCTC  480

Query  481  ATAGAGATGACAATGCAAATGGAGAAGCTCCTTCCTCTCGCTCTTGGATCCACACAAGTT  540
            |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct  481  ATAGAGATGACAATGCAAATGGAGAAGCTCATTCCTCTTGCTCTTGCATCCACACAAGTT  540

Query  541  GTTGGCGGGTGA  552
             |||||||||||
Sbjct  541  CTTGGCGGGTGA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5