BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331419

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12000.1 | Symbols:  | SNARE associated Golgi protein family...   111    2e-24


> AT4G12000.1 | Symbols:  | SNARE associated Golgi protein family 
| chr4:7193270-7195152 REVERSE LENGTH=1388
Length=1388

 Score =  111 bits (60),  Expect = 2e-24
 Identities = 77/85 (91%), Gaps = 2/85 (2%)
 Strand=Plus/Plus

Query  5    TCAAGCTTGGTCTTTTCTTCGCGATTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC  64
            |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  407  TCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC  466

Query  65   TCG-CTCCTTCAATCATGGATAAGG  88
            |   | |||| ||||||||||||||
Sbjct  467  TATAC-CCTTTAATCATGGATAAGG  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5