BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331439
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2555 0.0
> AT5G50350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to oxidative stress;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:20498476-20501680
REVERSE LENGTH=2045
Length=2045
Score = 2555 bits (1383), Expect = 0.0
Identities = 1649/1775 (93%), Gaps = 28/1775 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTTCTGCTTTCAATTCAACGATGAAGCGAACGACGTCGCTAGCCAAATCCTCA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 70 ATGGCGACTTCTGCTTTCAATTCAACGATGAAGCGAACGACGTCTCTAGCCAAATCCTCC 129
Query 61 GAGAGTGGCGACGATTCTTCTTACTCTACACGGAGGTCTGCTTCGAGAAGACACCGGAGT 120
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 130 GAGAGTGGCGACGACTCTTCTTACTCTACACGGAGGTCAGCTTCTAGGAGACACCGGAGT 189
Query 121 TTGAGCCGTTTCTCTCACCGCATGCCGGATCCAGACATCGAAGTGACTCCGATGAGGAAG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 190 TTGAGCCGTTTCTCTCACCGCATGCCGGATCCAGACATTGAAGTGACTCCGATGAGGAAG 249
Query 181 GGAAAGTTTGTTAACACCGTGAGAGGTTCTGGATTCGGTGAAATTAGTCTTGATGATTTA 240
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 250 GGAAAGTTTGTTAACACCGTGAGAGGTTCTGGATTCGGTGAAATTAGCCTCGATGATTTA 309
Query 241 GCTGTTGAGTTTTTTGAATCGTTTTCCGGTGAGAGTGAGATTAGTAGCGGAGAAAGAGGA 300
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 310 GCTGTCGAGTTTTTTGAATCGTTCTCCGGCGAGAGCGAGATTAGTAGCGGAGAAAGAGGA 369
Query 301 CGATCTGGTTTAAGAAAGTCTGGTGGTGGTAGCGGCGGAGGTGAAGGAGAGGTGGA-GAA 359
||||||||||||||||| || || || |||| | | | | |||||||| | |||
Sbjct 370 CGATCTGGTTTAAGAAATTCCGGCGGCGGTA-C--C----G-G-CGGAGAGGT-TACGAA 419
Query 360 TTCTCTAAGGAGGGGACGGTCTGTTTCTAGGGTTTGTTC---TGGTGGTAACGGTGGTTT 416
||| | |||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 420 TTCGCAAAGGAGGGGAAGGTCTGTTTCTAGGGTTGGTTCTGGTGGTGGTAACGGTGGTTT 479
Query 417 ACGGAGGTTGGGTGCTGATACTGAAAGCTCGAGACGGCGGAGGTCGTTGTCTAGACAGCC 476
||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 480 ACGGAGGTTAGATGCTGATACTGAAAGCTCGAGGCGACGGAGGTCGTTGTCTAGACAGCC 539
Query 477 GGAAAGTAATAATCGTGGTGGTTC-AGTTAGGGTAGATCCGGTGAGCAATAATTCGAGCC 535
|| |||||||||||||||||||| || || ||| ||| |||||||||| ||||||||||
Sbjct 540 GGCTAGTAATAATCGTGGTGGTTCAAG-TAAGGTTGATTCGGTGAGCAACAATTCGAGCC 598
Query 536 GGCGGAGGTCGGTTTCTAGACAACCGAGGGAGAAGGTTAAGG-CAGAGAACGGTGGTGGT 594
||||||||||||||||||||||||||| |||| |||||||| | |||||| ||||||||
Sbjct 599 GGCGGAGGTCGGTTTCTAGACAACCGAATGAGAGGGTTAAGGTC-GAGAACAGTGGTGGT 657
Query 595 GCAATTGGGGGAGATTGTGAAAACGCGAATTCACGGCGGCGACGGTCGCTTTCTGTTGTC 654
| ||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 658 GTAATTGAGGGAGATCGTGAGAACGCGAATTCGCGGCGACGACGGTCGCTTTCTGTTGTC 717
Query 655 CGTCGTCGGATTGAGAATTCGGAGAGTGATGTAGATCAAGTTCAGTATTCAAGCAGTTCA 714
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGTCGTCGGATTGAGAATTCTGAGAGTGATGTAGATCAAGTTCAGTATTCAAGCAGTTCA 777
Query 715 AGGGATGTGAAGAGCTTCATGAGTGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTG-T 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 778 AGGGATGTGAAGAGCTTCATGAGTGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTGCT 837
Query 774 GGCTTCAGATAATAGACAAGGTCTTAGGAGGTCTTTTAGTCAAAATCCAGTCAAATACCA 833
| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 838 G-CTTCAGATAATAGACAAGGTCTTAGGAGGTCTTTTAGCCAGAATCCAATCAAATACCA 896
Query 834 TGATGGCTACTCTAGCCAGTCTTCTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGATGGCTACTCTAGCCAGTCTTCTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTC 956
Query 894 TACCAAGCATGGAACTGAGAGGATAATTCGAACAGTATATGCCCAAAATAAGGCAACACC 953
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAGCAAGCATGGAACTGAGAGGATAATTCGAACAGTATATGCCCAAAATAAGGCAACACC 1016
Query 954 AAAGAAGAGAGAATCTTTGGGGAACTCCGAATATGGTTCCCAGCGGAAATCCCATGATGA 1013
|||||| |||||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 1017 AAAGAAAAGAGAATCTTTGGGGAACTCTGGTTATGGTTCCCAGCGGAAATCTCTTGATGA 1076
Query 1014 TCACCGTGCTGTCTCCACATTTACGAATGGTTATGCAACAAAATTGCAGGAGTCTGAGGA 1073
| |||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1077 TAACCGTGGTGTCTCCACATCTACGAAAGGTTATGCAACAAAATTGCAAGAGTCTGAGGA 1136
Query 1074 GCGCAAGCGAGATTTGCTGGCTGAGATTATGTTGGAGGAGGAGCGTGGTAGAGAGCTCTC 1133
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 GCGCAAGCGAGAGTTGCTGGCTGAGATTATGTTGGAGGAGCAGCGTGGTAGAGAGCTCTC 1196
Query 1134 TATGAACTTGAAAGAGTTACTTACTGAAAATAGTTCTGAAGCTGAGGAGAAGCCGTTGCG 1193
| ||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1197 TGTGAACTTGAAAGAAATACTCACTGAAAATAGCTCTGAAGCTGAGGAAAAGCCATTGCG 1256
Query 1194 GACGCGAAAGAGGAGCAAGGACCGGAGCAGCAGAATGTCCATGTGTTTGACAGATGAAGC 1253
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1257 GACGCGAAAGAGGAGCAAGGACCGGAGCAGGAGGATGTCCATGTGTTTGACAGATGAAGC 1316
Query 1254 AGAGCAATTCATTGACGAATTCATTTCAAACATAGAAGACACAGACTTTTCATCACTGGA 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGAGCAATTCATCGACGAATTCATTTCAAACATAGAAGACACAGACTTTTCATCACTGGA 1376
Query 1314 GGATGAGAGGAGCGAAAGTAGTTCAAGTTTTGGGATGATAAAAACACAAAGCTCTCAAGG 1373
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1377 GGATGAGAGGAGCGAAAGTAGTTCAAGTTTTGGAATGATAAAAACACAAAGCTCTCAAAG 1436
Query 1374 CACCACTGCTCTGAAGAGTA-TTCCTGTTGAAATGGACGGTGTTATGCTTCCTTGGTTGC 1432
||||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 1437 CACCAGTGCTCTTAAGAGTACTTC-TGTTGAAATGGACGGTGTTATGCTCCCTTGGTTGC 1495
Query 1433 AATGGGATACTCCAGACGACACTTCTGCTGCTGCATTGGCATGCCTTAACAAGTCGCCAA 1492
||||||| |||||||||| | | |||||||| |||||||||||| |||||||||
Sbjct 1496 AATGGGAAACTCCAGACG----TG-T-CTGCTGCAGTGGCATGCCTTATCAAGTCGCCGC 1549
Query 1493 ACACCCCAAATACAAAATCTCTTCTCTGGGAGTCGGACACAACTCAGGATGCATCGAGTG 1552
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1550 ACACCCCAAATTCAAAATCTCTTGTCTGGGAGTCGGATACAACTCAGGATGCATCGAGTG 1609
Query 1553 GGCAAGGGATGAGCATTGGTACCATAAGTAGCAGAGGAAGCTGGAGCCCATATGAGTCAG 1612
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1610 GGCGAGGGACGAGCATTGGTACCATAAGTAGCAGAGGAAGCTGGAGCCCATATGACTCGG 1669
Query 1613 TCACAAAACCTGTGAAGCCCATAAAAACACTAAAGATAGATGTAGCCGAGTATCTGAAGC 1672
|||| || ||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1670 TCACGAAGCCTGTGATGCCCACAAAAACACTAAAGATAGATGTAGCGGAGTATCTGAAGC 1729
Query 1673 GACCTAACAGCTCCGATATTCTAAATGAAACGTGGAAGCTAAGGCACAGAATCAGTTCGG 1732
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1730 GACCTAACAGCTCAGATATTCTAAATGAGACGTGGAAGCTAAGGCATAGAATCAGTTCGG 1789
Query 1733 GAAGTCTTGTGCTATGTAGCCGCTCATTGATCTAA 1767
|||||||||||||||||||||||||||||||||||
Sbjct 1790 GAAGTCTTGTGCTATGTAGCCGCTCATTGATCTAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5