BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331461
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50690.1 | Symbols: AtHSD7, HSD7 | hydroxysteroid dehydrogen... 1315 0.0
AT5G50590.1 | Symbols: AtHSD4, HSD4 | hydroxysteroid dehydrogen... 1315 0.0
> AT5G50690.1 | Symbols: AtHSD7, HSD7 | hydroxysteroid dehydrogenase
7 | chr5:20621330-20622638 FORWARD LENGTH=900
Length=900
Score = 1315 bits (712), Expect = 0.0
Identities = 841/901 (93%), Gaps = 17/901 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTAATCAACAAGATCCTCAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
|||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTAAACAACAAGATCTTTAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
Query 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCGGGTTCATAAGGAGATGCAAA 120
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCCAGTTCATAAGGGGATGCAAA 120
Query 121 GAGTCTGAGAAAGTCGACGGAAAAGTGGTCATCATCACCGGATCTTCCTCTGGAATTGGT 180
||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 GAGTCCGAGAAAGTCAACGGAAAAGTCGTCATCATCACCGGATCTTCCTCAGGAATTGGC 180
Query 181 GAGCACCTCGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCACCTAGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
Query 241 GAGGATCGTCTCCAGGTGGTTGCTGACAGGTGCAGGAAGCTTGGTTCACCAGA-----C- 294
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 241 GAGGATCGTCTCCAGGTGGTGGCTGACCGGTGCAGGAAGCTTGGTTCACCAGACGTTGCT 300
Query 295 GT--TA--C----A-GTCTCAGTCAT-AGAAGACTGTAAACGTTTTGTTCAAGAAACCAT 344
|| || | | ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 301 GTGGTACGCGGTGATGTCTCAGTCATCA-AAGACTGTAAACGTTTTGTTCAAGAAACCAT 359
Query 345 CTCTCGGTTTGGAAGATTGGATCGCCTGGTGAACAATGCTGGAATTGCAGAGGCCAAATT 404
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 360 CTCTCGGTTTGGAAGATTGGATCACTTGGTGAACAATGCTGGAATTGCGGAGGCCAAATT 419
Query 405 TTTCGATGACTATTCAGAAATTTCGGATGTTCTTCCCATTGTGAATACTAACTTTTGGGG 464
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TTTCGAGGACTATTCTGAAATTTCGGATGTTCTTCCCATTGTGAACACTAACTTTTGGGG 479
Query 465 ACCGGTTTACGCAACACATTTCGCTATACCACATATCAAGAAAACAAAAGGAAAGATCAT 524
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 480 ACCGGTTTACGCGACACATTTCGCTATACCGCATCTCAAGAAAACAAAAGGAAAGATCAT 539
Query 525 AGCGGTTGCATCGCCCGCGGGATGGTCTGGAGTGCCAAGGATGAGCATATATGCTGCAAG 584
|||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AGCGGTTGCATCACCTGCTGGATGGTCTGGAGTACCAAGGATGAGCATATATGCTGCAAG 599
Query 585 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 659
Query 645 TGTGACAATCGTGTTTCCGGGTCTAATCGAAAACGGAAATACCAATTCGGACCTTTTGGC 704
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 660 TGTGACAATCGTGTTTCCTGGTCTAATCGAAAACGGAAATACTAATCCGGACCTTTTAGC 719
Query 705 TGAGAAACAAGAGTGGTCACAAGTTGTGGCCATCGAGTCAGCAGCGGTATGCGCCAAAGC 764
|||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 720 TGAGAAACAAGACTGGTCGCAAGTTGTGACCATCGAGTCAGCAGCGGAATGCGCCAAAGC 779
Query 765 GGTTGTTAACGGAATATGTAGGGGAAAAACCTTTGTGGCAGAGCCGTCTTGGGTTCGTGT 824
||| ||||||||||| || || || ||||||||||||||||||||||| |||||||||||
Sbjct 780 GGTAGTTAACGGAATCTGCAGAGGCAAAACCTTTGTGGCAGAGCCGTCGTGGGTTCGTGT 839
Query 825 CCTGTTCTGGCTTAGTGCTATCTGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCTGTTCTGGCTTAGTGCTATATGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 899
Query 885 A 885
|
Sbjct 900 A 900
> AT5G50590.1 | Symbols: AtHSD4, HSD4 | hydroxysteroid dehydrogenase
4 | chr5:20587988-20589296 FORWARD LENGTH=900
Length=900
Score = 1315 bits (712), Expect = 0.0
Identities = 841/901 (93%), Gaps = 17/901 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTAATCAACAAGATCCTCAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
|||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTAAACAACAAGATCTTTAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
Query 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCGGGTTCATAAGGAGATGCAAA 120
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCCAGTTCATAAGGGGATGCAAA 120
Query 121 GAGTCTGAGAAAGTCGACGGAAAAGTGGTCATCATCACCGGATCTTCCTCTGGAATTGGT 180
||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 GAGTCCGAGAAAGTCAACGGAAAAGTCGTCATCATCACCGGATCTTCCTCAGGAATTGGC 180
Query 181 GAGCACCTCGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCACCTAGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
Query 241 GAGGATCGTCTCCAGGTGGTTGCTGACAGGTGCAGGAAGCTTGGTTCACCAGA-----C- 294
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 241 GAGGATCGTCTCCAGGTGGTGGCTGACCGGTGCAGGAAGCTTGGTTCACCAGACGTTGCT 300
Query 295 GT--TA--C----A-GTCTCAGTCAT-AGAAGACTGTAAACGTTTTGTTCAAGAAACCAT 344
|| || | | ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 301 GTGGTACGCGGTGATGTCTCAGTCATCA-AAGACTGTAAACGTTTTGTTCAAGAAACCAT 359
Query 345 CTCTCGGTTTGGAAGATTGGATCGCCTGGTGAACAATGCTGGAATTGCAGAGGCCAAATT 404
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 360 CTCTCGGTTTGGAAGATTGGATCACTTGGTGAACAATGCTGGAATTGCGGAGGCCAAATT 419
Query 405 TTTCGATGACTATTCAGAAATTTCGGATGTTCTTCCCATTGTGAATACTAACTTTTGGGG 464
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TTTCGAGGACTATTCTGAAATTTCGGATGTTCTTCCCATTGTGAACACTAACTTTTGGGG 479
Query 465 ACCGGTTTACGCAACACATTTCGCTATACCACATATCAAGAAAACAAAAGGAAAGATCAT 524
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 480 ACCGGTTTACGCGACACATTTCGCTATACCGCATCTCAAGAAAACAAAAGGAAAGATCAT 539
Query 525 AGCGGTTGCATCGCCCGCGGGATGGTCTGGAGTGCCAAGGATGAGCATATATGCTGCAAG 584
|||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AGCGGTTGCATCACCTGCTGGATGGTCTGGAGTACCAAGGATGAGCATATATGCTGCAAG 599
Query 585 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 659
Query 645 TGTGACAATCGTGTTTCCGGGTCTAATCGAAAACGGAAATACCAATTCGGACCTTTTGGC 704
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 660 TGTGACAATCGTGTTTCCTGGTCTAATCGAAAACGGAAATACTAATCCGGACCTTTTAGC 719
Query 705 TGAGAAACAAGAGTGGTCACAAGTTGTGGCCATCGAGTCAGCAGCGGTATGCGCCAAAGC 764
|||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 720 TGAGAAACAAGACTGGTCGCAAGTTGTGACCATCGAGTCAGCAGCGGAATGCGCCAAAGC 779
Query 765 GGTTGTTAACGGAATATGTAGGGGAAAAACCTTTGTGGCAGAGCCGTCTTGGGTTCGTGT 824
||| ||||||||||| || || || ||||||||||||||||||||||| |||||||||||
Sbjct 780 GGTAGTTAACGGAATCTGCAGAGGCAAAACCTTTGTGGCAGAGCCGTCGTGGGTTCGTGT 839
Query 825 CCTGTTCTGGCTTAGTGCTATCTGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCTGTTCTGGCTTAGTGCTATATGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 899
Query 885 A 885
|
Sbjct 900 A 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5