BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331474
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | ch... 1825 0.0
> AT5G50850.1 | Symbols: MAB1 | Transketolase family protein |
chr5:20689390-20693285 FORWARD LENGTH=1547
Length=1547
Score = 1825 bits (988), Expect = 0.0
Identities = 1065/1101 (97%), Gaps = 9/1101 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGGCTTGGCTGCTTCGACTCTTAGA 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 147 ATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGA---------GCTTCGACTCTTAGG 197
Query 61 AGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAGATGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAGATGACA 257
Query 121 GTCAGAGATGCTCTAAATTCTGCAATTGATGAGGAAATGTCTGCAGATCCTAAAGTATTT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 258 GTCAGAGATGCTCTAAATTCTGCAATTGATGAGGAAATGTCTGCTGATCCTAAAGTATTT 317
Query 181 GTTATGGGTGAAGAGGTTGGTCAATATCAAGGTGCCTACAAGATCACTAAAGGTCTTTTG 240
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 318 GTCATGGGTGAAGAGGTTGGCCAATATCAAGGTGCCTACAAGATCACTAAAGGCCTTTTG 377
Query 241 GAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACCGAGGCTGGATTTACTGGA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 378 GAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACTGAGGCTGGATTTACTGGA 437
Query 301 ATTGGAGTTGGTGCTGCCTATGCTGGCTTGAAGCCTGTTGTAGAATTTATGACGTTTAAC 360
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 438 ATTGGAGTTGGTGCTGCCTATGCTGGCTTAAAGCCCGTTGTAGAATTTATGACGTTTAAC 497
Query 361 TTCTCTATGCAGGCAATTGATCATATCATCAATTCCGCTGCAAAGTCAAATTACATGTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTCTCTATGCAGGCAATTGATCATATCATCAATTCCGCTGCAAAGTCAAATTACATGTCT 557
Query 421 GCTGGACAGATAAATGTACCCATCGTCTTTAGAGGACCCAATGGTGCGGCTGCTGGTGTT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 558 GCTGGACAGATAAATGTACCCATCGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGTGTT 617
Query 481 GGGGCTCAACATTCTCAGTGCTATGCAGCGTGGTATGCTTCAGTTCCTGGTTTGAAAGTC 540
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 618 GGAGCTCAACATTCTCAGTGCTATGCAGCGTGGTATGCCTCAGTTCCTGGTTTGAAAGTC 677
Query 541 CTCGCTCCATATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCT 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CTTGCTCCGTATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCT 737
Query 601 GACCCTGTTGTCTTCCTTGAAAACGAGTTACTATATGGTGAATCATTCCCTATTTCAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GACCCTGTTGTCTTCCTTGAAAACGAGTTACTATATGGTGAATCATTCCCTATTTCAGAA 797
Query 661 GAAGCACTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGATTGAACGAGAAGGA 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GAAGCCCTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGATTGAACGAGAAGGA 857
Query 721 AAGGATGTGACGATAGTAACTTTCTCGAAGATGGTCGGTTTTGCCCTCAAGGCAGCTGAG 780
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 858 AAGGACGTAACGATAGTAACTTTCTCGAAGATGGTCGGTTTCGCCCTCAAGGCAGCTGAG 917
Query 781 AAGCTCGCAGAAGAGGGAATAAGTGCTGAGGTAATAAATCTTCGTTCTATCCGTCCGCTT 840
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 918 AAGCTCGCAGAAGAGGGAATAAGTGCTGAGGTAATAAATCTTCGATCAATCCGTCCGCTT 977
Query 841 GACAGAGCCACCATCAATGCTTCAGTGAGGAAAACGAGTAGATTGGTAACAGTTGAAGAA 900
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GACCGAGCCACCATCAATGCTTCAGTGAGGAAAACGAGTAGATTGGTAACAGTTGAAGAA 1037
Query 901 GGTTTCCCTCAACATGGAGTCTGTGCAGAAATCTGTGCGTCGGTTGTAGAAGAGAGCTTT 960
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 GGTTTCCCACAACATGGAGTCTGTGCAGAAATTTGTGCGTCGGTTGTAGAAGAGAGCTTT 1097
Query 961 TCATACTTGGATGCACCGGTGGAGAGGATTGCAGGAGCTGATGTTCCAATGCCTTATGCA 1020
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1098 TCGTACTTGGATGCACCGGTCGAGAGGATTGCAGGAGCTGATGTTCCAATGCCGTATGCA 1157
Query 1021 GCTAACCTAGAGAGATTGGCTCTTCCTCAGATAGAGGATATCGTTCGAGCATCAAAGAGA 1080
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1158 GCTAACCTAGAGAGATTGGCTCTTCCTCAGATAGAGGACATCGTTCGTGCATCAAAGAGA 1217
Query 1081 GCTTGTTACAGATCGAAATAA 1101
|||||||||||||||||||||
Sbjct 1218 GCTTGTTACAGATCGAAATAA 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5