BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331477
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50890.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1978 0.0
> AT5G50890.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:20702684-20704235 FORWARD LENGTH=1227
Length=1227
Score = 1978 bits (1071), Expect = 0.0
Identities = 1175/1227 (96%), Gaps = 0/1227 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCGAATCGTGTGGCCATGGAAGAAGATATTACTGAATCTGTGACGTTAATGGTG 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGCGAATCGTGTGGCGATGGAAGAAGATATTACTGAATCTGTGACTTTAATGGTG 60
Query 61 GATTCCGTTGCTTCTTCTCCGATGACTCCGAAGACGGTGGTGGTTAAGGAAGATGAAACT 120
||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 61 GATTCCGTTTCTTCTTCTCCGATGACTCCGAAGACTGTGACGGTTAAGGAAGATGAAACT 120
Query 121 CATCATCCTTACGCGTTTCATGTTTCCGGTCCGAGAAATGTTGCTTCTCCTAATTGGAGA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCATCCTTATGCGTTTCATGTTTCCGGTCCGAGAAATGTTGCTTCTCCTAATTGGAGA 180
Query 181 GATCTCATCAACTCCAGTTGGAAGGATCCTAACTACAAGAGAACAGTAATGGCGTGTTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GATCTCATCAACTCCAGTTGGAAGGATCCTAACTACAAGAGAACAGTAATGGCCTGTTTT 240
Query 241 ATTCAAGCAGCTTACTTGCTTGAACTCGACCGACAGGAGAATCGAAACGAGCAAAACGCT 300
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 241 ATTCAAGCAGCTTACTTGCTTGAACTCGACAGACAAGAGAATCGAAACGAGCAAAACGCT 300
Query 301 CTCGCACCAAAATGGTGGATTCCTTTTAAGTACAAGTTATCGCAAACGCTGATTGACGAG 360
||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||
Sbjct 301 CTCGCACCAAAATGGTGGATTCCATTCAAGTACAAGTTATCACAAACGCTCATTGACGAG 360
Query 361 AGAGATGGATCCATATTTGGCGCTGTTCTTGAATGGGACAGAGCAGCTGCAATGGCAGAC 420
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGATGGATCAATATTTGGTGCTGTTCTTGAATGGGACAGAGCAGCTGCAATGGCAGAT 420
Query 421 TTGGTTGTCATCAGACCAAGTGGGGCACCAAAAGCAGTACTAGCGTTGCGTGGAACGATA 480
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 421 TTGGTTGTCATCAGACCAAGTGGGGCACCAAAAGCAGTACTTGCGCTGCGAGGAACGATA 480
Query 481 CTAAAGAGTCTTACAATGAGGCGTGATATAGAAGATGATCTCCGGTTTTTAGCTTGGGAG 540
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 481 CTAAAGAGTCTTACAATGAGACGTGACATAGAAGATGATCTCCGATTTTTAGCTTGGGAG 540
Query 541 AGTCTTAAAGGTTCTGTGAGGTTTAACGTCGCTCTCGAGGCGCTGCAATCAGTAGCAACG 600
|| ||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||
Sbjct 541 AGCCTTAAAGGTTCTGTGAGGTTTAATGTTGCTCTAGAGGCGTTGCAATCAGTAGCAACG 600
Query 601 AGATATGGGAGTAGTAATGTCTGTGTAGTGGGTCATTCGTTAGGAGCTGGTTTTGCTTTA 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 AGATATGGGAGCAGTAATGTCTGTGTAGTGGGGCATTCGTTAGGAGCTGGTTTTGCTTTA 660
Query 661 CAAGTTGGTAAAGCCTTGGCAAAAGAAGGGCTATTTGTGGATGCTCATTTGTTCAATCCA 720
|||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 661 CAAGTTGGTAAATCCTTGGCTAAAGAAGGGTTATTTGTAGATGCTCATTTGTTCAATCCA 720
Query 721 CCTTCTATATCTGTCGCTATGAGCTTGAGAAACATCAGTGAAAAAGCTGGTGTTGCTTGG 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 CCTTCTATATCTGTCGCTATGAGCTTGAGAAACATCAGTGAGAAAGCTGGTGTTGCTTGG 780
Query 781 AAAAGGCTCATGTCAATGCTTCCTCCCAAAAACGAGCCTCTGATACCGAATAGTAACGAA 840
||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 781 AAAAGACTCATGTCAATGCTTCCTCCCAAACACGAGCCTCTGATACAGAATAGTAACGAA 840
Query 841 GGACAGGTTTCTCCTGGCAATGTTTCTTCAGGGTTCAGGAACTGGGTACCGAGTTTCTAT 900
|| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 GGTCAGGTTTCTCCTAGCAATGTTTCATCAGGGTTCAGGAACTGGGTACCGAGTTTCTAC 900
Query 901 GGGTCGAATCAGAAATCTACTGTGGATTTGAGAAAATGGGTGCCTCATTTATATGTGAAC 960
||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 901 GGGTCGAATCAGAAACCTACTGTGGATTTAAGAAAATGGGTGCCTCATCTATATGTGAAC 960
Query 961 GATAGCGACTATATCTGTTGCCACTACACTGACCAGGATGGAGTAACAGAGAAGAGAGAA 1020
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 961 GATAGCGACTATATTTGTTGCCACTACACTGACCAGGATGGAGTAGCAGAGAAGAGGGAA 1020
Query 1021 ATGAACAACAAAGAGAACAATAGCCCTGTTGTAAACACTAATTCTCAAGCAGCAGCAAAG 1080
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 ATGAACAACAAAGAGAACAATAGCCCTGTTGTAAACACTAATTTTCAAGCAGCAGCAAAG 1080
Query 1081 CTTTTCGTGATGTCGAAAGGGAAACAGAAGTTTCACGAGGCGCACGGGCTAGAACAATGG 1140
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1081 CTTTTCGTGATGTCGAAAGGGAAACAGAAGTTTCACGAGGCGCACGGGTTAGAACAATGG 1140
Query 1141 TGGTCAGATAATCTAGAGCTTCAATCAGCTATTCACAGCAGCAGGTTGATCAGTCAGCAA 1200
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGTCTGATAACCTAGAGCTTCAATCAGCTATTCACAGCAGCAGGTTGATCAGTCAGCAA 1200
Query 1201 CTCAAGTCATTATACAGTATCAAGTAA 1227
|||||||||||||||||||||||||||
Sbjct 1201 CTCAAGTCATTATACAGTATCAAGTAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5