BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331481

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50930.1 | Symbols:  | Histone superfamily protein | chr5:20...   754    0.0  


> AT5G50930.1 | Symbols:  | Histone superfamily protein | chr5:20722069-20724440 
FORWARD LENGTH=852
Length=852

 Score =  754 bits (408),  Expect = 0.0
 Identities = 450/470 (96%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  87   ACACAGGCGAAGAAAACCTAGCTCTTGCTTCGCCATGGACGTCGGAGGAGAAGACATAAG  146
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  262  ACACAGGCGAAG-AAACCTAGCTATTGCTTCGCCATGGACGTCGGAGGAGAAGACATAAG  320

Query  147  CGATCTCCAGGTAGACCAAATCGTTGAAGAAGATTCCATGGATGATCTCATTAGAGACCG  206
            ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct  321  CGATCTCCAGGTAGACCAAATCGTTGAAGAATATTCTATGGACGATCTCATTAGAGACCG  380

Query  207  ATTCAGACTCTCCGCGATCTCTATCGCCGAAGCCGAGGCGAAGAAAAATGGAATGGAAAT  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  ATTCAGACTCTCCGCGATCTCTATCGCCGAAGCCGAGGCGAAGAAAAATGGAATGGAAAT  440

Query  267  AGGAGGACCTGTTGTGGCATGTGTGGCGGATTTAGCCTTCAAATATGCAGAAAATGTTGC  326
            ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  441  AGGTGGACCTGTTGTGGCATGTGTGGCAGATTTAGCCTTCAAATATGCAGAAAACGTTGC  500

Query  327  AAAGGA-CGTTGAACTATTTGCTCATCATGCTGGACGCAAAGTTGTGAACATGGACGATG  385
            |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  501  AAAGGATC-TTGAACTATTCGCTCATCATGCTGGACGCAAAGTTGTGAACATGGACGATG  559

Query  386  TTGTTCTCTCCGCTCATAGAAACGATAACTTAGCTGCGTCTTTGAGGTCATTGTGCAATG  445
            ||||||||||||| |||||||||||||||||||| || |||||||||||| | |||||||
Sbjct  560  TTGTTCTCTCCGCGCATAGAAACGATAACTTAGCAGCATCTTTGAGGTCACTATGCAATG  619

Query  446  AGTTAAAGGCAAAAGAGCCACAATCGGATAGGAAACGCAAGAAAGGATCAGCCAAGAAAG  505
            || |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  620  AGCTAAAGGCAAAGGAGCCACAATCTGAGAGGAAACGCAAGAAAGGATCAGCCAAGAAAG  679

Query  506  AAGACAAAGCCAGTAGTAGCAATGCCGTTCGCATCACGACCGATCTGTAA  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  680  AAGACAAAGCCAGTAGTAGCAATGCCGTTCGCATCACGACCGATCTGTAA  729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5