BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331482
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50940.1 | Symbols: | RNA-binding KH domain-containing prot... 553 1e-156
> AT5G50940.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:20724578-20726479 FORWARD LENGTH=1101
Length=1101
Score = 553 bits (299), Expect = 1e-156
Identities = 553/665 (83%), Gaps = 59/665 (9%)
Strand=Plus/Plus
Query 303 TTACAGCCCTACCTCTCCTAGTTACAGCCCTACTTCTCCTAGTTACAGCCCTGTCTCTCC 362
||||| || || ||||| | |||||||||||| |||||||||||||||||| ||||||
Sbjct 402 TTACATCCTTAAATCTCCAACTTACAGCCCTACCTCTCCTAGTTACAGCCCTACCTCTCC 461
Query 363 TGA-TCACA-GCACTACCTCTCCTCAATG-CTGCCCT-ACCTCTAC-TCAG-CACAGCCC 416
| | | ||| || ||| |||| || | || | ||||| | |||| | | || |||||||
Sbjct 462 T-AGTTACAGGC-CTAACTCTTCT-AGTGACAGCCCTGA-CTCT-CAT-AGTTACAGCCC 515
Query 417 TATCTTGAGCTCTCCTCCTGAAGATGATGGTTATGGTCCTGAGC-ACATGGAAGCT-GAA 474
||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||
Sbjct 516 TATCTTGAGCTCTCCTCCTGAAGATTATGGTTATGGTCCTGA-CGACATTGAAGCTGGAA 574
Query 475 AACAAGACCAA-TGATCATCTCACGGAGATTGGGGATGGATACT-TCCATGTGGATGGTA 532
|| | || || |||||| |||| ||| |||||||||||| | | ||||||||||||||
Sbjct 575 AA-ATGA-AAACTGATCAACTCAAGGAAATTGGGGATGGA-AGTAGCCATGTGGATGGTA 631
Query 533 GAAATTACCCGGAA-GCTGAGGCCACTCGCACAATTCATGTCCCATGTTCTAAGGTAGCT 591
||||||| || || |||||| |||||||||||||||||||| ||||| | ||||| | |
Sbjct 632 GAAATTA-CCACAAGGCTGAGACCACTCGCACAATTCATGTCTCATGTCCAAAGGTGGAT 690
Query 592 CTACTGGTTGGTGCTGCAGCGACTTTACGGTTTCTTCAGCACAACCTTTGTGCT-AGAAT 650
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 691 CTACTGGTTGGTGCTGCGGCGACTTTACGGTTTCTTCAGCACAACCTTTGTGCTCA-AAT 749
Query 651 CCGTATTTTAAAGGATTCAGACGTTGATTTGAAGTCTGCACAAAGACCAGTGGAATTAAC 710
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 750 CCGTATTTTGAAGGATTCAGAGGTTGATTTGAAGTCTGCACAAAGACCAGTGGAATTAAC 809
Query 711 TGGAACTGTTTTACAGATCGAGTTTACGCAGCAGCTTATCGACTCTGTCCTAGCAGAGTC 770
|||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 810 TGGAACTGTTTTACAGATAGAGTTTACTCAGCAGCTTATCGAGTCTGTTTTAGCAGAG-- 867
Query 771 TGAGAAATTTGGTTACAATAATTTCAGGAGAATCATGATTAACCAATGGAAGAGGAAAAA 830
||||| | || | || | | || | ||| ||||||||||||
Sbjct 868 -GAGAA-T-------CA-TGAT----G-A-AA-C--------CCA-TGGAAGAGGAAAG- 900
Query 831 ACTAAGAAACCATCTTCTCAGAAAGATTGTGAAGCTCTTATTAAGCAAGTTC--ATGCCG 888
||||||| ||||||||||||||||||||| |||||||| |||| |||| | |||||
Sbjct 901 --TAAGAAATCATCTTCTCAGAAAGATTGTGGAGCTCTTACTAAGTAAGTCCCCATGCCC 958
Query 889 AGTATGAATATCCCACGTGTGAT-GCAGCAACCTCTCCAAGGATATGAAGTTGTTCAAGT 947
||| |||| |||||||||||||| || ||||||||||||||||||||||||| |||| ||
Sbjct 959 AGTCTGAACATCCCACGTGTGATAGCTGCAACCTCTCCAAGGATATGAAGTTTTTCATGT 1018
Query 948 -TTGA 951
||||
Sbjct 1019 GTTGA 1023
Score = 207 bits (112), Expect = 1e-52
Identities = 128/135 (95%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 1 ATGTCACAATCTGGCTCTTCTCCGACGAAGAAACAGAAGCTGGATGATGGTTTAGGTAAA 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 88 ATGTCACAATCTGACTCTTCTCCGACGAAGAAACAGAAGCTGGAGGATGGTTTAGGTAAA 147
Query 61 GGAAAATCTCAGAACGAGATTGGTGCTGTAGGGATTCGAGAAGAGAAAGATAAT---GAA 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 148 GGAAAATCTCAGAACGAGATTGGTGCTGTAGGGATTCGAGAAGAGAAAGATAATATTGAA 207
Query 118 GCTGAGAATGCGAAG 132
| ||||||||| |||
Sbjct 208 GTTGAGAATGCTAAG 222
Score = 95.3 bits (51), Expect = 1e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 207 CATGCACATTACGACCCTTATGGTTATGGTGGTTCTCCTTTTGGAACTGGATCC 260
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 337 CATGCACATTACGACCCTTATGGTTATGGTGGTTCTCGTTTTGGAACTGGATCC 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5