BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331488
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2488 0.0
> AT5G50990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:20739419-20741281 FORWARD LENGTH=1639
Length=1639
Score = 2488 bits (1347), Expect = 0.0
Identities = 1522/1608 (95%), Gaps = 6/1608 (0%)
Strand=Plus/Plus
Query 1 ATGCTGAGAATCTCCATTAATGTCTCCGGAGTCAGAAGATTCTGCGTCACCTCTCTCTCG 60
|||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 35 ATGCAGAGAATCTCCATTAATGTCTCCGGAATCAGAAGATTCTGCATCACCTCTCTTTCG 94
Query 61 TCACT-TTCCGCTTCAAACCTCACCGATCATCGGATATTGAAACAAGTTCTTGAATCATG 119
||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 95 TCA-TCTTCCGCTTCAAACCTCACCGATCATGGGATGTTGAAACAAGTTCTTGAATCATG 153
Query 120 CAAAGCTCCTTCAAATTCTAAATGTGTTCTTCAAGCACATGCTCATATCTTTAAACTTGG 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 154 CAAAGCTCCTTCAAATTCTAAATGTGTTCTTCAAGCACATGCTCAGATCTTTAAACTTGG 213
Query 180 GTACGGAACGTATCCATCTCTTCTTGTCTCCACAGTTGCAGCTTATAGACGCTGCAACCG 239
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 214 GTACGGAACATATCCATCTCTTCTTGTCTCCACAGTTGCAGCTTACAGACGCTGCAACCG 273
Query 240 TTCATATCTTGCTCGACGGCTTCTTCTTTGGTTCCTCTCTCTGTCTCCTGGTGTCTGTAA 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 274 TTCATATCTTGCTCGACGGCTTCTTCTTTGGTTCCTCTCTTTGTCTCCTGGTGTCTGTAA 333
Query 300 CACAAACCTAATCATTGAGAGTCTTGTGAAAATTGGAGAGTCCGGTTTGGCCAAGAAGGT 359
|| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 334 CATAAACCTAATCATTGAGAGTCTTATGAAAATTGGAGAGTCTGGTTTGGCCAAGAAGGT 393
Query 360 TCTTCGTAACGCGAGTGATCAGAATGTGATCACCTGGAATTTGATGATTGGTGGTTATGT 419
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 394 ACTTCGTAATGCGAGTGATCAGAATGTGATCACCTGGAACTTGATGATTGGTGGTTATGT 453
Query 420 TAGAAATGTTCAGTATGAAGAAGCTTTGAAAACTCTTAAGAATATGCTTAGTTTTTCGGA 479
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct 454 TAGAAATGTCCAGTATGAAGAAGCTCTGAAAGCTCTTAAGAATATGCTTAGTTTTACTGA 513
Query 480 TTTTAAACCGAATAAGTTCAGTTTCGCTTCCTCTTTAGCTGCTTGTGCCCGTCTTGGAGA 539
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 514 TATTAAACCGAATAAGTTCAGTTTTGCTTCCTCTTTAGCTGCTTGTGCCCGTCTTGGAGA 573
Query 540 TCTACACCATGCGAAGTGGGTGCATTCTCTGATGATTGAT-GCTGGGATTGAACTTAATG 598
||| |||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||
Sbjct 574 TCTGCACCATGCGAAGTGGGTGCACTCTCTGATGATTGATAG-TGGGATTGAGCTTAATG 632
Query 599 CAATATTGTCTTCTGCACTTGTCGATGTGTATGCAAAGTGCGGAGATATAGAAACTTCGA 658
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 633 CAATATTGTCTTCTGCACTTGTTGATGTGTATGCAAAGTGTGGAGATATAGGAACTTCGA 692
Query 659 GGGAGGTATTCTGTAGTGTTAAACGGAACGATGTGTCTATTTGGAACGCGATGATCACGG 718
||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 693 GGGAGGTTTTCTATAGTGTTAAACGGAACGATGTGTCGATTTGGAACGCGATGATCACGG 752
Query 719 GTTTTGCTACTCATGGGCTAGCCACAGAAGCAATCAGAGTGTTTTCAGAGATGGAAGCGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GTTTTGCTACTCATGGGCTAGCCACAGAAGCAATCAGAGTGTTTTCAGAGATGGAAGCGG 812
Query 779 AACATGTTTCACCAGACTCTATAACATTTCTCGGGCTTTTAACGGCTTGTAGCCATTGTG 838
|||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||| |
Sbjct 813 AACATGTTTCACCAGATTCTATAACATTCCTCGGGCTTTTAACAACGTGTAGCCATTGCG 872
Query 839 GTTTGCTTGAAGAAGGGAAAGAGTACTTTGGTCTAATGAGTCAG-CGGTTTTCAATACAG 897
|||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct 873 GTTTGCTTGAAGAAGGGAAAGAGTACTTTGGTCTAATGAGTC-GCCGCTTTTCTATACAG 931
Query 898 CCAAAGTTAGAGCATTACGGGGCTATGGTTGATCTGCTAGGCCGAGCAGGACGGGTAAAA 957
|||||||||||||| || || |||||||||||||||||||||||||||||| | ||||||
Sbjct 932 CCAAAGTTAGAGCACTATGGTGCTATGGTTGATCTGCTAGGCCGAGCAGGAAGAGTAAAA 991
Query 958 GAAGCGTATGAGTTGATAGAATCAATGCCGATTGAGCCAGATGTGGTCATATGGAGGTCT 1017
|||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 992 GAAGCGTACGAGTTGATCGAATCAATGCCGATAGAGCCAGATGTAGTGATATGGAGGTCT 1051
Query 1018 CTTCTTAGTTCTTCTAGAACTTTTAAGAATCCCGAGCTAGGAGAAATTGCGATACAGAAT 1077
||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 1052 CTTCTTAGTTCCTCTAGAACTTATAAGAATCCTGAGCTAGGAGAAATCGCGATACAGAAT 1111
Query 1078 CTTTCAAAGGCAAAGAGCGGAGACTATGTGTTGCTTTCGAACATCTATAGCACCACGAAG 1137
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1112 CTTTCAAAAGCAAAGAGCGGAGACTATGTGTTGCTTTCGAACATATATAGCTCCACGAAG 1171
Query 1138 AAATGGGAGAGTGCTCAAAAGGTTAGAGAATTGATGACTAAGGAAGGAATCCGTAAAGCA 1197
||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1172 AAATGGGAGAGCGCTCAAAAGGTCAGAGAGTTGATGAGTAAGGAAGGAATCCGTAAAGCG 1231
Query 1198 AAAGGAAAGAGTTGGGTGGAATTTGGAGGGATGATACATCGGTTTAAGGCAGGGGATACA 1257
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1232 AAAGGAAAGAGTTGGTTGGAATTTGGAGGGATGATACATCGGTTTAAGGCAGGAGATACA 1291
Query 1258 TCTCATATAGAAACAAAGGCTATATACAAAGTACTAGAAGGTTTGATACAGAAAACTAAG 1317
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1292 TCTCATATAGAAACAAAAGCTATATACAAAGTATTAGAAGGTTTGATACAGAAAACTAAG 1351
Query 1318 TCTGAAGGATTTGTGTCTGACACGGATTTGGTGTTAATGGATGTCTCTGAAGAAGAGAAA 1377
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1352 TCTCAAGGATTTGTGTCTGACACGGATTTGGTGTTGATGGATGTTTCTGAAGAAGAGAAA 1411
Query 1378 GAGGAGAATTTGAATTACCACAGCGAAAAGCTTGCGTTGGCATATGTGATCTTGAAGAGT 1437
|| ||||| || ||||| |||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1412 GAAGAGAACTTAAATTATCACAGCGAAAAGCTCGCGTTGGCGTATGTGATATTGAAGAGT 1471
Query 1438 AGTCCAGGAACAGAAATTAAAATTCAGAAGAATATACGGATGTGTAGTGATTGCCACAAC 1497
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGTCCAGGAACAGAAATTAGAATTCAGAAGAATATACGGATGTGTAGTGATTGCCACAAC 1531
Query 1498 TGGATAAAAGCAGTGTCGAAGTTGTTGAATAGAGTGATTATAATGCGGGATCGGATACGG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TGGATAAAAGCAGTGTCGAAGTTGTTGAATAGAGTGATTATAATGCGGGATCGGATACGG 1591
Query 1558 TTTCATAGATTTGAAGATGGGTTGTGTTCTTGCAAAGATTACTGGTAA 1605
|||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 1592 TTTCATAGGTTTGAAGATGGGTTGTGTTCTTGCAGAGATTATTGGTAA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5