BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331490

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51010.1 | Symbols:  | Rubredoxin-like superfamily protein |...   634    0.0  


> AT5G51010.1 | Symbols:  | Rubredoxin-like superfamily protein 
| chr5:20744566-20745703 FORWARD LENGTH=873
Length=873

 Score =  634 bits (343),  Expect = 0.0
 Identities = 431/471 (92%), Gaps = 15/471 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGATGCAGCTTCCTCCGACGACTCTTTACGCCGGAAGATCCTCCGTGGTC-T---T  56
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |   |
Sbjct  50   ATGGCGATGCAGCTTCCTCCGACGACACTTTACGCCGGAAGATCCTCCGTGGTCTTACCT  109

Query  57   ---AC--CTCCAACCCTCCACATATCATCTTTCTTGCCTTATTACTCGATGAGACTACTT  111
               ||  ||||||||||||| | |||||||||||||||||||||||||||||| ||||| 
Sbjct  110  CCGACGACTCCAACCCTCCAGAGATCATCTTTCTTGCCTTATTACTCGATGAGGCTACTC  169

Query  112  GGCAACAAGAAGTCTCTTTCCAAATCTTCATCCTCTGCTCCTAGATTCTCCATGCGTGTC  171
            || |||||||||||||||||| ||     |||||||||||||||||||||||||||||||
Sbjct  170  GGAAACAAGAAGTCTCTTTCC-AA-----ATCCTCTGCTCCTAGATTCTCCATGCGTGTC  223

Query  172  TCCTCCAAGCAAGCCTATATTTGCCGTGATTGCGGGTATATTTACAATGATAGAACTCCA  231
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  TCCTCTAAGCAAGCCTATATTTGCCGTGATTGCGGGTATATTTACAATGATAGAACTCCA  283

Query  232  TTCGACAAGTTGCCTGATAACTATTTCTGTCCAGTGTGTGCTGCTCCTAAACGGCGTTTT  291
            || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  284  TTTGACAAGTTACCTGATAACTATTTCTGTCCAGTGTGTGCTGCTCCTAAACGGCGGTTT  343

Query  292  AGACCGTACATGCCTGATGTGAGCAAGAATGTCAACGACAAAGATGTGAGAAAGGCCAGA  351
            ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  344  AGAGCTTACATGCCTGATGTGAGCAAGAATGTCAACGACAAAGATGTGAGAAAGGCTAGA  403

Query  352  AAAGCTGAGCTCCAAAGAGACGAAGCTGTCGGGAAGGCTTTGCCTATAGCAATTGCGGTT  411
            |||||||||||||||||||||||||| |||||||||||| | ||||||| |||||| |||
Sbjct  404  AAAGCTGAGCTCCAAAGAGACGAAGCCGTCGGGAAGGCTCTACCTATAGGAATTGCAGTT  463

Query  412  GGAGTTTTGGCTCTCGCGGCTCTTTACTTCTATGTCAACAACAACACATGA  462
            || ||||| |||||||| |||||||||||||||||||| | || | |||||
Sbjct  464  GGGGTTTTAGCTCTCGCAGCTCTTTACTTCTATGTCAATAGCACCTCATGA  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5