BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331540
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11 |... 470 1e-131
AT5G51610.1 | Symbols: | Ribosomal protein L11 family protein ... 335 4e-91
> AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11
| chr1:11955785-11957284 FORWARD LENGTH=856
Length=856
Score = 470 bits (254), Expect = 1e-131
Identities = 564/707 (80%), Gaps = 47/707 (7%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCTTCTCTATCAACCCTTTGCAGTTGC-ACTTCGTCTTCTCTGTATCCTAA 59
||||||||||||||||||||||| |||||||| | | ||||| |||||||| |||| ||
Sbjct 43 ATGGCGTCTTCTTCTCTATCAACTCTTTGCAGCT-CAACTTCTTCTTCTCTACATCCCAA 101
Query 60 CACTAAGCTCTCACGTTATCTTTCGGC-AAACTTAACCTCCAAAACAAATGTTTCCATTC 118
| | || ||||||| || |||||| || ||| ||| |||||||| ||||||||||| | |
Sbjct 102 CTCCAAACTCTCACATTCTCTTTCAGCTAAA-TTATCCTCCAAAGCAAATGTTTCCGTCC 160
Query 119 AGTTTCTTGGAAAGAAACCGTTC-CCGCTTCTCTCCTCAAC-CATGAGATTTCTCACTGT 176
| ||||| |||||||||| | || ||||||||||||||||| | |||||||||||||||
Sbjct 161 AATTTCTGGGAAAGAAACAG-TCTCCGCTTCTCTCCTCAACTC-CGAGATTTCTCACTGT 218
Query 177 TGTCGCCGCCACGGCTCAATC-AATACCTAGAGGCAAAACCAAAAAAGTGGTTGGAACTA 235
| | ||||| ||||| | | || ||| |||||||| | |||||||| || ||| ||
Sbjct 219 TAT---CGCCATGGCTCCACCTAA-ACCCGGAGGCAAAGCTAAAAAAGTTGTGGGAGTTA 274
Query 236 T-AAAAATGAATGTATG-GGCGGGAAGAGCAACTCCGGCGCCCCCGGTAGGTCCGGCGTT 293
| ||| || | || | |||||||| |||||||||||| || ||||| ||||||||| |
Sbjct 275 TCAAACTTG-CTTTA-GAGGCGGGAAAAGCAACTCCGGCACCACCGGTTGGTCCGGCGCT 332
Query 294 TGCTTCGAGGGGAGACAATCAAGAAAAACA-TATGGCTAAGCGTTTTTGCAAGGAGTACA 352
|| ||| | ||||| | |||| ||| | || |||||||||||| || |
Sbjct 333 TGGTTCTAAGGGAG----T------TAACATTAT-G----GC-TTTTTGCAAGGATTATA 376
Query 353 ACGCCCGAACCGCAGATAAA-CTCGGTGATATAATTCCTGTCCTAGTTACAGTCTACGAT 411
| || |||| || |||||| || ||| |||| |||||||| | | || |||| ||||
Sbjct 377 ATGCAAGAACTGCTGATAAAGCT-GGTTATATCATTCCTGTTGAAATCACTGTCTTCGAT 435
Query 412 GATATGAGCTTCACTTTTATCCTCAAGACCCCTCCTGCTTCGTTTTTGTTGCTTAAGGCT 471
|||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||||||| |||
Sbjct 436 GATAAGAGCTTCACGTTTATTCTCAAGACCCCGCCTGCTTCGGTTTTGTTGCTTAAAGCT 495
Query 472 CAAGACCCCTCCTGCTTCA-AA-GGATCTAAAGATCCAAAGCAAAATAAAGTTGGGATGA 529
| | || || | || ||||| ||||||||| ||||| ||||||||||| |||
Sbjct 496 ---G----CAGGTG-TTGAGAAGGGATCAAAAGATCCACAGCAAGATAAAGTTGGGGTGA 547
Query 530 TAACAATAGAACAACTCCGCAAAATTGCAGAAGAAAAGCTGCCTGAGCTGAATTGCACTA 589
|||||||||| || || |||| |||||||| ||| ||||| || || ||||| ||||| |
Sbjct 548 TAACAATAGACCAGCTACGCACAATTGCAGCAGAGAAGCTACCCGACCTGAACTGCACGA 607
Query 590 CAATTGTATCCGCTATGAGAATCATTGCAGGAACTGCATCTAACATGGGGATAGACATTG 649
| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 608 CCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGACATTG 667
Query 650 ACCCTCCTATTCTTGAACCTAAAAAAGAAAATAGCTTTGTTTTAAAA 696
||||||| ||||||||||| ||||| |||| || ||| || |||||
Sbjct 668 ACCCTCCGATTCTTGAACCCAAAAA-GAAAGCAGTTTTATTGTAAAA 713
> AT5G51610.1 | Symbols: | Ribosomal protein L11 family protein
| chr5:20965577-20966805 FORWARD LENGTH=549
Length=549
Score = 335 bits (181), Expect = 4e-91
Identities = 249/280 (89%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 417 GAGCTTCACTTTTATCCTCAAGACCCCTCCTGCTTCGTTTTTGTTGCTTAAGGCTCAAGA 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 279 GAGCTTCACTTTTATCCTCAAGACCCCTCCTACTTCGTTTTTGTTGCTTAAGGCT---G- 334
Query 477 CCCCTCCTGCTTCA-AA-GGATCTAAAGATCCAAAGCAAAATAAAGTTGGGATGATAACA 534
| || || | || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 335 ---CAGGTG-TTAAGAAGGGATCAAAAGATCCAAAGCAAATTAAAGTTGGGATGATAACA 390
Query 535 ATAGAACAACTCCGCAAAATTGCAGAAGAAAAGCTGCCTGAGCTGAATTGCACTACAATT 594
||||| ||| | |||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 391 ATAGACCAAGTGCGCAAAATTGCAGAAGTAAAGCTGCCTGAGCTGAATTGCACAACAATT 450
Query 595 GTATCCGCTATGAGAATCATTGCAGGAACTGCATCTAACATGGGGATAGACATTGACCCT 654
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 451 GTATCCACTATGAGAACCATTGCAGGAACTGCGGGTAACATGGGGATAGACATTGACCCT 510
Query 655 CCTATTCTTGAACCTAAAAAAGAAAATAGCTTTGTTTTAA 694
|||||||||||||||||||| ||| |||||||||| |||
Sbjct 511 CCTATTCTTGAACCTAAAAAC-AAAGTAGCTTTGTTGTAA 549
Score = 257 bits (139), Expect = 9e-68
Identities = 239/285 (84%), Gaps = 16/285 (6%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCTTCTCTATCAAC-CCTTTGCAGTTGCACTTCGTCTTCTCTGTATCCTAA 59
|||||||||||||||||||| || ||||||||| ||||| | ||||||||| || | |
Sbjct 1 ATGGCGTCTTCTTCTCTATC-ACACCTTTGCAGCTGCAC--C-TCTTCTCTGCAT-C-AT 54
Query 60 CACTAAGCTCTCACGTTATCTTTCGGCAAACTTAACCTCCAAAACAAATGTTTCCATTCA 119
| || ||||||| || | ||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 55 C-CT---CTCTCACATTCTATTTCGGCTAACTTAACCTCCAAAACAAATCTTTCCTTTCA 110
Query 120 GTTTCTTGGAAAGAAACCGTTCCCGCTTCTCTCCTCAACCATGAGATTTCTCACTGTTGT 179
|||||||| ||| | || || ||| ||||||||||||||| ||||| |||||| ||| |
Sbjct 111 GTTTCTTGCAAACAGACAGTCCCCACTTCTCTCCTCAACCCCGAGATCTCTCACCGTTAT 170
Query 180 CG-C--CGCCACGGCTCAATC-AATACCTAGAGGCAAAACCAAAAAAGTGGTTGGAACTA 235
|| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
Sbjct 171 CGCCGGCGCCACGGCTCCGTCGAA-ACTTAGAGGCAAAACCAAAAAAGTGGTTGGAATTG 229
Query 236 TAAAAATGAATGTATGGGCGGGAAGAGCAACTCCGGCGCCCCCGG 280
||||||||||||||||||| |||| ||||||| |||||| ||||
Sbjct 230 TAAAAATGAATGTATGGGCCGGAAAAGCAACTTTGGCGCCGCCGG 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5