BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331546
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51700.1 | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein bindi... 1000 0.0
> AT5G51700.1 | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein binding;zinc
ion binding | chr5:21001209-21003205 REVERSE LENGTH=907
Length=907
Score = 1000 bits (541), Expect = 0.0
Identities = 637/683 (93%), Gaps = 7/683 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGTAGGATCTGAAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATG 122
Query 61 TTCACCGATG-CTGATAATCCTCAAGGTTCTTGTCAATTCCATGCTTCC---CCATTTTT 116
|||||||||| | || ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 123 TTCACCGATGAC-GACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTT 181
Query 117 TCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTT 241
Query 177 CTTGGAAATTCCAGGATGTAAAACTGGTAAACACACAACTGAGAAACCAGTCCTGGCCAA 236
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 242 CTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAA 301
Query 237 ACCGGCTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAAC 296
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAAC 361
Query 297 AAAAGGCTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGGCTCCCAACC 356
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACC 421
Query 357 CAAAGAGCAGACCAGGCAGACCCTAAACACCCCGGTACAAGCAGAAGAAGAGAAGATTGA 416
|||||| |||| || ||||||||| ||||| |||| ||||||||||||||| || |||||
Sbjct 422 CAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAGCAGAAGAAGAAAAAATTGA 481
Query 417 ATCCTTAGCACCTCCAATTA-AAAAGGTTGTTATAGACATCAATCAACCGCAAGTCTGCA 475
| ||||||| |||||| | | |||||| ||| |||||||| |||||||||||||||||||
Sbjct 482 ACCCTTAGCGCCTCCAGT-ACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCA 540
Query 476 ACAACAAAGGATGTGGAAAAACATTCAAAGAGAGAGACAATCACGAGACTGCTTGTAGCT 535
| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 541 AAAACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCC 600
Query 536 ATCATCCAGGTCCTCCGGTCTTCCACGACAGACTGAAAGGATGGAAATGCTGTGATGTTC 595
|||||||||||||| ||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct 601 ATCATCCAGGTCCTGCGGTCTTCCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTC 660
Query 596 ACGTGAATGAGTTCGACGAGTTCATGGAAATACCTCCTTGCACTAAAGGTTGGCATAGCA 655
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 ACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCACTAAAGGATGGCATAGCA 720
Query 656 GCAGCCCCAATCAGGCGGTCTGA 678
||||||| ||| ||||||||||
Sbjct 721 GCAGCCCTGATCCGGCGGTCTGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5