BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331550

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47770.1 | Symbols:  | Beta-galactosidase related protein | ...   117    2e-25
  AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | ch...   106    4e-22


> AT1G47770.1 | Symbols:  | Beta-galactosidase related protein 
| chr1:17590266-17591261 FORWARD LENGTH=618
Length=618

 Score =  117 bits (63),  Expect = 2e-25
 Identities = 98/113 (87%), Gaps = 10/113 (9%)
 Strand=Plus/Plus

Query  686  TGGATATTTGGGTTATGGAGACACAAGGATGGTCCAAGA--T-TTTCT-T-T-A---AGG  736
            |||| |||||||| |||||||||||||||||||||||||  | ||| | | | |   |||
Sbjct  366  TGGAAATTTGGGTCATGGAGACACAAGGATGGTCCAAGATTTGTTTTTATGTGATGGAGG  425

Query  737  GTTCAATAAAATGGCGCATCTTGGATGCTACTCATGATGGTGAGATCGTTTTG  789
            ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct  426  GTTCAATAAAATGGCGCATCTTGGAGGCTACT-ATGGTGGTGAGATCGTTTTG  477


> AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | 
chr5:12683327-12684600 FORWARD LENGTH=1274
Length=1274

 Score =  106 bits (57),  Expect = 4e-22
 Identities = 354/484 (73%), Gaps = 74/484 (15%)
 Strand=Plus/Plus

Query  263  TATATAACCCTACCACAAGGCAGTCCTT--GTACTTCCTAAAGAAGAAAACGATGCACAT  320
            ||||||||||||||||||||||||||||  | ||| || | | | ||   ||  ||| ||
Sbjct  519  TATATAACCCTACCACAAGGCAGTCCTTTCG-ACTACCGATA-ATGA---CG--GCA-AT  570

Query  321  GGAGA-CTAGTTTCATCGGGTACGACCCTCTT-GAGAATCAATATAAAGTATTGTTCTTA  378
            || || || | ||| |||| || ||||| | | ||||||||||| ||||||||| || ||
Sbjct  571  GG-GAACTTGCTTCTTCGGATATGACCC-CATAGAGAATCAATACAAAGTATTGCTCATA  628

Query  379  CCAAAGTACAATCCT--GA-GCA-GCCTTGTCTAGTTTTTACATTGGGAGAAACAGCA--  432
            |||   | || | ||  || ||| || ||||| |||||| | | ||||| || |  ||  
Sbjct  629  CCATT-T-CA-TACTATGAAGCAAGC-TTGTCAAGTTTTCATAATGGGA-AATCC-CACG  682

Query  433  ACGAAG---TGGAAGA-CTATACAAGGCGTT-GA-----ATCTCAC-CATCCA-TTGCAA  480
            ||||||   |||| || | || ||||| ||| ||     ||||||| | |||| || |  
Sbjct  683  ACGAAGCAGTGGAGGAAC-ATCCAAGGTGTTAGACTTGGATCTCACTC-TCCACTT-CTT  739

Query  481  GGTGC-GCTTTGCATCAATGGGAGA-ATCTATTACCAAGCAGGGAT-TGTTGATCA--A-  534
            ||||  | ||||| |||||||| |  |||||||  | ||| || |  |   || ||  | 
Sbjct  740  GGTGGAG-TTTGCGTCAATGGG-GCTATCTATTTTCGAGC-GGAAGCTAA-GA-CAGTAC  794

Query  535  T--ATGACTCTACTTCTCTATACAAACTGATGAGTTTTGATGTTAGGTCGGAGGAGTTTC  592
            |  |||| ||||| | | ||||  || ||| |  |||| |||||||||||||  ||||| 
Sbjct  795  TTTATGAATCTACAT-T-TATATTAA-TGA-GT-TTTT-ATGTTAGGTCGGA--AGTTTT  846

Query  593  ATAACAT-TGAAG-CTCCTA-AAACATTGATGGATTA-C-CG-TTCTTA-TCTAATAAAC  645
             || ||| |  || |||| | ||||||||||| || | | || |||  | ||||||||||
Sbjct  847  TTATCATGTCCAGTCTCC-ACAAACATTGATGAATCATCACGGTTCC-ACTCTAATAAAC  904

Query  646  TACCAAGGGAAGTTAGGATTCGTGTGTTGC--GAA-AAGGGCGTGGATATTTGGGTTATG  702
            |||||||||| ||||||||||||| |||||  ||| |||| ||| || ||||||||||||
Sbjct  905  TACCAAGGGATGTTAGGATTCGTGAGTTGCACGAAGAAGGCCGTTGAAATTTGGGTTATG  964

Query  703  GAGA  706
             |||
Sbjct  965  TAGA  968



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46366117681


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5