BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331561
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51845.1 | Symbols: | Defensin-like (DEFL) family protein |... 357 2e-98
> AT5G51845.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:21077143-21077502 FORWARD LENGTH=222
Length=222
Score = 357 bits (193), Expect = 2e-98
Identities = 215/225 (96%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 1 ATGATGTCTTCGAAGTGTCATTTTGTTGCTCTTCTCTTGATCACTATTTCTCTCATTGTT 60
|||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1 ATGATGTCTTCGAAGTCTCATTTTGTTGCTCTTCTCTTGATCA-T-TTT-TCTCATTGTT 57
Query 61 AATGTTCAATCTACTCGGATTATGGATGATTCAAGCGATTGTGTATTCAAAGGACCATGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AATGTTCAATCTACTCGGATTATGGATGATTCAAGCGATTGTGTATTCAAAGGACCATGT 117
Query 121 CAAAGGAGGTCAGATTGTTACAAAAGGTGTGGAGTGAAACCACCTTCTAGAACTGCTTTG 180
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 118 CAAAGGAGGTCAGATTGTTACGAAAGGTGTGGATTGAAACCACCTTCTAGAGCTGCTTTG 177
Query 181 TGTCAACCTATGGGACTCCACGGACTTGTATGTTGTTGTCTCTAA 225
|||||||||||||||||||| || | |||||||||||||||||||
Sbjct 178 TGTCAACCTATGGGACTCCAAGGCCGTGTATGTTGTTGTCTCTAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5