BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331604
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52350.1 | Symbols: ATEXO70A3, EXO70A3 | exocyst subunit exo... 2300 0.0
> AT5G52350.1 | Symbols: ATEXO70A3, EXO70A3 | exocyst subunit exo70
family protein A3 | chr5:21254911-21257618 FORWARD LENGTH=1761
Length=1761
Score = 2300 bits (1245), Expect = 0.0
Identities = 1537/1675 (92%), Gaps = 31/1675 (2%)
Strand=Plus/Plus
Query 79 TACGAATGTCCTAAATGCGGTATCTTCTTCCACAAGGAATGCACCGAGTCCACAACAGAG 138
||||||||| |||||||||||||||||||||||| ||| | | ||||||| ||||||||
Sbjct 79 TACGAATGTACTAAATGCGGTATCTTCTTCCACAGGGATTCCGTCGAGTCCGCAACAGAG 138
Query 139 ATTAACGCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACGATGAA 198
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 139 ATTAACCCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACAATGAA 198
Query 199 TCTATCAAAGTTGATGAAAGAGGAGCAAGCAACATTCATTTCACAGATGAACATCATGGA 258
|||||||| || || ||||||||| || ||||| ||||||||| |||||||||||||||
Sbjct 199 TCTATCAAGGTAGACGAAAGAGGAACATGCAACTTTCATTTCATAGATGAACATCATGGT 258
Query 259 AAGGTTGATGATATAAACAACACAGGATATGATGCTTGCAAGTTCAAACAGATTCTGGAA 318
|||||||||| ||| | ||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 259 AAGGTTGATGGTAT--A-AACACAGAATATGATGCGTCCAAGTTCAAACAGATTCTGGAA 315
Query 319 AATTACAGCAAGCCAATAGAACCTAAACACCTTTTCGAGTGTCTCCCAAGCAATCTTCGG 378
||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 316 AATTACAGCAAGCTAACAGAACCTAATCAACTTTTCGAGTGTCTCCCAAGCAATCTTCGG 375
Query 379 CCATCATCAGACGGTGCAA-GTAGTGACGGAAAGAGTTATGATCCACAATCAAATGGCTT 437
||| | ||||||| || || |||||||||||||||| ||||||||||||||||||||||
Sbjct 376 CCACCGTCAGACGATG-AAGGTAGTGACGGAAAGAGCCATGATCCACAATCAAATGGCTT 434
Query 438 AGAGAAAGA-TGATTTTACGGTCCCAACAATCATCCCACCAATGGTTTTGCCTCTGCTTC 496
|| |||| | ||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 435 AG-GAAAAACTGATTATACGGTCCCAACAATCATCCCACCAACGGTTTTGCCTGTGCTTC 493
Query 497 ATGATTTAGCCCAACAAATGGTTAAAGCTGGTCATCAGCAACAACTTTTCGAAACTTACA 556
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 494 ATGATTTAGCCCAACAGATGGTTAAAGCTGGTCATCAGCAAGAACTTTTCAAAACTTACA 553
Query 557 GGGATACTCGTAGGGCAGTGTTGGAGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 616
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 554 GGGATATTCGTAGGGCAGTGTTGGCGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 613
Query 617 GCAAAGATGCTGTTCAGAGAATGAAGGAGGACATCTTAGATGCCAAGATGCGGAATTGGA 676
||||| ||| |||| |||||||||| ||||| |||| || |||||||| ||||||||
Sbjct 614 GCAAATATGATGTTGAGAGAATGAATCAGGACGTCTTCGAGGCCAAGATTATGAATTGGA 673
Query 677 TCCATTACATGCGAATATCTGTGAAACTGTTATTTGCTGCGGAAAAGGAAATCTGCAACC 736
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 674 TCCATTACATTCGAATATCTGTGAAACTGTTATTTGCTGCGGAGAAGGAAATCTGCCACC 733
Query 737 AAATACTTGATGGTGTTGAGCCACTTAGAGATCAGTCTTTTGCTGAAATCACTACTATTA 796
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 734 AAATACTTGATGGTGTTGAGCCATTTAGAGATCAATCTTTTGCTGAAATCACTACTATTA 793
Query 797 GTTTTGATATGCTTCTTAGTTTCGGATATGCAATCGCTATCAGCAGGAGATCGCCGGAAA 856
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 794 GTTTTGGTATGCTTCTTAGTTTCGGATATGCTATCGCTATCAGCAGGAGATCGCCGGAAA 853
Query 857 AACTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 916
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 AAGTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 913
Query 917 TGATCTTTGGAAGCCAACCTTGTTCCGAGATGAAAGAAGATGCATTGAATCTGACAAAGC 976
|||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 914 TGATCTTTGGAAGCAAACCTTGTACTGAGATGAAAGAAGATGCACTGAATCTGACAAAGC 973
Query 977 TATTAGCTCAGACAGTGAAAGAAACTATTGTTGATTTCGAAGACGCTGTTGAAATGGATG 1036
|||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 974 TATTAGCTCAAACTGTGAAAGAAACTATTGCTGATTTCGAAGTTGCTATTGAAATGGATG 1033
Query 1037 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTG-AGAGA 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1034 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTGCA-AGA 1092
Query 1096 TACGTCACGTACTTGTTCGATTACAAATCGACGTTGAGGCAACTT---C-----TT---- 1143
||||||| || ||||||||||||| || ||||||||||||||||| | ||
Sbjct 1093 TACGTCAAGTTCTTGTTCGATTACGAACCGACGTTGAGGCAACTTTTTCAAGAGTTTAAT 1152
Query 1144 ---------CCTGATACCAAGCTGAAATCCGCGTTAACGGGTATCATGAGGGCTTTAATG 1194
|||||||||||||| ||||||| | | |||||||||||||||||||||| |
Sbjct 1153 AGTAATGATCCTGATACCAAGCTTAAATCCGTGATGACGGGTATCATGAGGGCTTTAAGG 1212
Query 1195 AACAATCTGGATGGTAAATCCAGACAGTACGAAGATGCAGCATTATCTCAACTATTCTTA 1254
|||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 1213 AACAATCTGGATGGTAAATCTAGACAGTTCGAAGATGCAGCATTAACTCAACTATTCTTA 1272
Query 1255 ATGAATAATGTGTATTACATAGTGAGACATTTTAGAAGGGAAGAAGCAAAGGATTTGTTG 1314
|||||||||||||||||||| || ||| |||| |||||||||||||||||| |||| |||
Sbjct 1273 ATGAATAATGTGTATTACATTGTAAGAAATTTCAGAAGGGAAGAAGCAAAGAATTTTTTG 1332
Query 1315 GGTGATGATTGGGTTCAAACACATGGAAGAATCATAAAACAACACGCAAATCAGTACCAG 1374
|||||||||| ||||||||||||| |||||||| || ||||||||||||| |||||||||
Sbjct 1333 GGTGATGATTTGGTTCAAACACATAGAAGAATCGTACAACAACACGCAAAACAGTACCAG 1392
Query 1375 ACAGTTTCTTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1434
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 ACAATTTCCTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1452
Query 1435 ATAAAGAACAAAAGTATAACAAAAACATTAGTAAAAGAAAAATTCAAGACTTTTAATTCT 1494
|||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 1453 ATAAAGAATGAAAGTATAAAAAAAACTTTAGTAAAAGAAAAATTCAAGACTTTCAATTCT 1512
Query 1495 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTTAGTTCCGGACGTTGAGATGCGT 1554
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1513 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTCCGTTTCGGACGTTGAGCTGCGT 1572
Query 1555 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1632
Query 1615 CATTTCGGGCCGATGATAGAGAGTGGTAAGAACTCACAGACGTATATAAGGTTCACTACT 1674
| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1633 CGTTTCGGGCCGATGATTGAGAGTGGTAAGAACTCACAGAAGTATATAAGGTTCACTCCT 1692
Query 1675 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCGAAGGAAAAAACTTGGA-GTGA 1728
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1693 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCCAAGGAAAAAACTTGGATGTGA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5