BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331608
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52400.1 | Symbols: CYP715A1 | cytochrome P450, family 715, ... 1796 0.0
> AT5G52400.1 | Symbols: CYP715A1 | cytochrome P450, family 715,
subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD
LENGTH=1560
Length=1560
Score = 1796 bits (972), Expect = 0.0
Identities = 1082/1136 (95%), Gaps = 4/1136 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTTCTTGAGATGTCTCGAGTTTGGTACATAGTCTTCAAAGTTTTCGTCGTAGTT 60
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAGTTTTTTGAGATGTCTCGAGTTTGGTACATATTCTTCAAAGTTTTCGTCGTAGTT 60
Query 61 CTTTGCCTCATGTTCTTGAAGCTCTTTGTGCGTTGTTGGATTTTGCCGGTTCGAGCTCAA 120
|||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||
Sbjct 61 ATTTGCCTCATGTTCTTGAAGCTCTTTCTGCGTTGTTGGATATGGCCAGTTCGAGCTCAA 120
Query 121 AAGAAGCTTAGAGAAAATGGATTT-TTCGGTCCAGCTCCTAGTTTTCC-TTTAGGAAACC 178
||||||||||||| ||| |||||| || |||||||||||||||||||| ||| |||||||
Sbjct 121 AAGAAGCTTAGAGGAAACGGATTTGTT-GGTCCAGCTCCTAGTTTTCCATTT-GGAAACC 178
Query 179 TTAATGACATGAAGAAGCTGAAGATGGCCTCGGTTATGGTGGATAATAGCAAATCTTCCA 238
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 179 TTAATGACATGAAGAAACTGAAAATGGCCTCGGTTGTGGTGGATAATAGCAAATCTTCCA 238
Query 239 CCATTATCAACCATGACATACACTCCATTGCACTACCACATTTCGCTCGGTGGCAACAAG 298
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 239 CCATCATCAATCATGACATACACTCTATTGCACTTCCACATTTCGCTCGGTGGCAACAAG 298
Query 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGAATAGAGCCATTCGTTTACGTGGCGGATC 358
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGGATAGAGCCGTTCGTGTACGTGGCCGATC 358
Query 359 CTGAATTCTTGAGTGTTATGTCGAAAGGTGTATTGGGAAAGAGTTGGGGAAAACCAAATG 418
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 359 CTGAATTCTTGAGTGTTATGTCGAAAGGGGTATTGGGGAAGAGTTGGGGAAAACCAAATG 418
Query 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGGGATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGAGATG 478
Query 479 ATTGGACACGACATCGCCACATCATCACCCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 ATTGGACACGACATCGCCACATCATCACTCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538
Query 539 TGACAAATATGATGGTGGAATCAGTCTCCAACATGTTGGACCGATGGGACATACAAATAA 598
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 539 TGACAAATATGATGGTGGAATCAGTCTCCAATATGTTGGACCGATGGGGCATACAAATAA 598
Query 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGGTTATAGGAACAGCTGGTGAGATAA 658
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
Sbjct 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGATCATAGGAACAGCCGGTGAGATTA 658
Query 659 TAGCCAAGACAAGCTTCGGAGTCACCGGAGAAAACGGCACTCAAGTCCTCAAAAACCTAC 718
| ||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 659 TCGCCAAGACAAGCTTCGGTGTCACGGGAGAAAATGGAACTCAAGTCCTCAAAAACCTAA 718
Query 719 GAGCCGTGCAATTCGCTCTCTTCAACTCGAATCGCTATGTAGGCGTACCGTTCAGCAACA 778
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||
Sbjct 719 GAGCCGTGCAATTCGCTCTCTTCAACTCAAATCGCTACGTAGGCGTGCCATTCAGCAACA 778
Query 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGAGCTAGGTCAAGAGATAGATAGTCTCC 838
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGGGCTAGGTCATGAGATAGATGGTCTCC 838
Query 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898
Query 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958
Query 959 TGGACGAATGCAAAACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGACGAATGCAAGACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018
Query 1019 GGACGTTCATGCTTCTGGCAATCCATCCCGAGTGGCAAGACACGCTCAGGCAAGAGATTA 1078
||||||| |||||||| || |||||||||||||||||||||||| ||||| |||||||||
Sbjct 1019 GGACGTTTATGCTTCTTGCGATCCATCCCGAGTGGCAAGACACGATCAGGGAAGAGATTA 1078
Query 1079 GACAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134
Score = 660 bits (357), Expect = 0.0
Identities = 403/426 (95%), Gaps = 0/426 (0%)
Strand=Plus/Plus
Query 1168 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCAGCGCCTAACGCACAACGT 1227
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1135 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCGGCACCGAACGCACAACGA 1194
Query 1228 CAAGCCCGAAAAGACATTGAAGTGAACGGTCGGGTGATTCCTAACGGAACAAACATTTGG 1287
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1195 CAAGCCCGAAATGACATTGAAGTGAACGGACGAGTGATTCCAAACGGAACAAACATTTGG 1254
Query 1288 ATTGATGTGGTGGCAATGCACCACGACGCTGAGTTGTGGGGAGACGACGTTAACGAGTTT 1347
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1255 ATTGATGTGGTGGCGATGCACCACGACGTTGAGTTGTGGGGAGATGACGTTAACGAGTTT 1314
Query 1348 AAACCGGAAAGATTCGACGGCAATTTACACGGTGGTTGTAAGAATAAAATGGGTTATATG 1407
|| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1315 AAGCCTGAGAGATTCGACGGTAATTTGCACGGTGGTTGTAAGAATAAAATGGGTTACATG 1374
Query 1408 CCGTTTGGGTTCGGAGGGAGGATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1467
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CCGTTTGGATTCGGAGGGAGAATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1434
Query 1468 ATTGTCTTGTCATTGGTTTTGTCCCGGTTTGAAATCTCGGTTTCACCCGGTTATCGCCAT 1527
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1435 ATTGTCTTGTCGTTGGTTTTGTCCCGGTTCGAAATCTCGGTTTCGCCCGGTTATCGCCAT 1494
Query 1528 TCTCCGACGTACATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1587
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TCTCCGACGTATATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1554
Query 1588 CTTTAG 1593
||||||
Sbjct 1555 CTTTAG 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5