BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331617
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 667 0.0
> AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858
REVERSE LENGTH=907
Length=907
Score = 667 bits (361), Expect = 0.0
Identities = 550/635 (87%), Gaps = 38/635 (6%)
Strand=Plus/Plus
Query 2 TGGTGAACGATGTTGAGGCCATATGTCGTCATGCCGTTGACCGTAGCCAGGGTGGCTTGC 61
|||||||| || |||||| ||||||||| | |||||||| |||||| ||||||||||||
Sbjct 128 TGGTGAACAATCCTGAGGCGATATGTCGTAACGCCGTTGATCGTAGCGAGGGTGGCTTGC 187
Query 62 TTGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACCTACATCGCCGAGAGGT 121
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 188 TGGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACATACATCGCGGAGAGGT 247
Query 122 CAAGTAATCTTAAAAGCCTTGGACTCGCAATGTGCTCTGAAATAACAGAGGAGGGATTTG 181
|||||||||||| ||||||| |||| ||||||||| ||||||||||| || |||||||
Sbjct 248 CAAGTAATCTTAGAAGCCTTAGACT---AATGTGCTCAGAAATAACAGACGATGGATTTG 304
Query 182 TTCAAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTATCAGGAATGTTATTGT 241
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 305 TTCAAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAATATCATTGT 364
Query 242 CAGGAGAGTCTTTGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGTCATTGAAACTAA 301
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 365 CAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGATGCTAA 424
Query 302 ACCGCCTCTTTTACTTAAATTCTAG-TGATGATG-T--TAATGCCATAGCAATTGCAGAA 357
|||||||||||||||||| ||| | |||||||| | | ||||||||||||||||||||
Sbjct 425 ACCGCCTCTTTTACTTAAGTTC-GGATGATGATGATCATGATGCCATAGCAATTGCAGAA 483
Query 358 AGCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGGA-AACACTAACCAAAACAGGCTT 416
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 484 AGCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGAACAA-ACTAACCAAAACAGGCTT 542
Query 417 AAACGCCATTCTTGACAGTTGTCCTCACATGGAACACCTCGATTTGCGCCAATGTTTCAA 476
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 543 AAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACGCCAATGTATCAA 602
Query 477 CCTTAAGCTTGCCGGGAATCTAGCGAAGCGTT-TC---A-AA-------GATTTGAGACT 524
|||| | | | |||||||||| |||||||| | | || ||||||||||
Sbjct 603 CCTT--G-T--C-GGGAATCTAGAGAAGCGTTGTTTTGAGAAAATTAAAGATTTGAGACG 656
Query 525 CTC-CAATGATTCAACCTCTGATGA---CCCGTTTGGTTATGCAACT-A-TCATTTTTCA 578
| | ||||||||| ||||||| ||| ||||||| || || |||| | | ||||| ||
Sbjct 657 C-CACAATGATTCTACCTCTGCTGATTACCCGTTTTCTTTTGAAACTTACT-ATTTT-CA 713
Query 579 TTTGCCACACCAATTGACATTACTGAAAGAAGGCG 613
|| | ||| ||||||| || |||| ||| || |||
Sbjct 714 TTGGTCACGCCAATTGGCAATACTTAAA-AATGCG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5