BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331636
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52760.1 | Symbols: | Copper transport protein family | chr... 448 3e-125
AT5G52770.1 | Symbols: | Copper transport protein family | chr... 285 2e-76
> AT5G52760.1 | Symbols: | Copper transport protein family | chr5:21386824-21387703
FORWARD LENGTH=639
Length=639
Score = 448 bits (242), Expect = 3e-125
Identities = 348/396 (88%), Gaps = 19/396 (5%)
Strand=Plus/Plus
Query 6 GACCGCGAAGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGAAGAAAGC 65
|||||| ||||| |||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 98 GACCGCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAACCAGGAAGAAAGC 157
Query 66 GCTTGTCACCGTTTCTCGATTTTCAGGGGTTACTTCGATAACAATAGATGACAAAAGTGG 125
||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 158 GCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAAT-G--GACAAAAGTGG 214
Query 126 GAAAATGACGGTAGTTGGAGAAGTTGATGTACCGGTTATCGTGATCAAGCTGAGGAAGCT 185
||||||||| |||||||||||||||||||||| | | ||||||| ||||| ||||||||
Sbjct 215 GAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAAGCTAAGGAAGCT 274
Query 186 ATGTCACACAGATATCGTTTCGGTAGATGATGTTAAACCACCTGAGAAAAAGCTTGAACC 245
|||| ||||||| |||||||| || ||||||||||||||||||| ||||||| ||||||
Sbjct 275 ATGTAACACAGAGATCGTTTCAGTCGATGATGTTAAACCACCTGTTAAAAAGCCTGAACC 334
Query 246 GGAGAAACCAGCTCCACCTATACCGGCTGAATTTATTACATAT-CCGATGAACTACGCGT 304
|||||||||||| | |||| | | | | || | | | ||||||||||||||||
Sbjct 335 TGAGAAACCAGCTGAATCTATT--G-C--A-T--ATC-C-TGTTCCGATGAACTACGCGT 384
Query 305 ACCAATAT-AATCCTCATGCCTATGCAAATTCTTACTATCATCAACCATACGGGAATTGT 363
|||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 385 ACCAAT-TCAATCCT---GCCTATGCAAATTCTTACTATCATCAACCATACGGAAATTGT 440
Query 364 AGAGTAGTAGACGAACCAAATTGTGTGATTATGTGA 399
||||| ||||||||||||||||||||||||||||||
Sbjct 441 AGAGTGGTAGACGAACCAAATTGTGTGATTATGTGA 476
> AT5G52770.1 | Symbols: | Copper transport protein family | chr5:21389766-21390189
FORWARD LENGTH=336
Length=336
Score = 285 bits (154), Expect = 2e-76
Identities = 225/259 (87%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 14 AGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGAA-GAAAGCGCTTGTC 72
||||||||||||||||||| |||| | |||||||||||||| ||| ||||| ||||
Sbjct 6 AGAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAAAATCA-GAATGAAAG-TTTTGTG 63
Query 73 ACCGTTTCTCGATTTTCAGGGGTTACTTCGATAACAATAGATGACAAAAGTGGGAAAATG 132
|||||| | ||||| |||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 64 ACCGTTGCAGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACTG 123
Query 133 ACGGTAGTTGGAGA-AGTTGATGTACCGGTTATCGTGATCAAGCTGAGGAAGCTATGTCA 191
|||||||| ||||| | |||||||||| |||||||||| ||||| |||||||||||| |
Sbjct 124 ACGGTAGTGGGAGACA-TTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTAA 182
Query 192 CACAGATATCGTTTCGGTAGATGATGTTAAACCACCTGAGAAAAAGCTTGAACCGGAGAA 251
||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 183 GACAGAGATTATTTCGGTAGATGCTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAA 242
Query 252 ACCAGCTCCACCTATACCG 270
||| |||||||||| ||||
Sbjct 243 ACCGGCTCCACCTAAACCG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18850405875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5