BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331646
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52880.1 | Symbols: | F-box family protein | chr5:21431836-... 1212 0.0
> AT5G52880.1 | Symbols: | F-box family protein | chr5:21431836-21433712
REVERSE LENGTH=993
Length=993
Score = 1212 bits (656), Expect = 0.0
Identities = 750/796 (94%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGATACCAAAATCTAATGGTAGGAGAAGCTTTATCGAAGAATCGTCTTTACCCA 60
||| |||||||||||||||||| ||||||||||||||| || || |||||| ||||||||
Sbjct 18 ATGAAGAGATACCAAAATCTAAAGGTAGGAGAAGCTTTCTCCAAAAATCGTATTTACCCA 77
Query 61 TTTGCTTGCAATGAACTAAGCTCCATTTTGAATCTTGCTTACTCTCGATTACCCAAAAAT 120
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 78 TTTGCTTGCAATGAACTAAGCTCCATATTGAATCTTGCTTACTCTCTATCACCCAAAAAT 137
Query 121 GTCAAAGCTTTGATCTTTCGAGATACCCTCTCCGCTTTTCGTCTTCTTCCCGACATCAAT 180
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GTCAAAGCTTTGATCTTCCAAGATACCCTCTCCGCTTTTCGTCTTCTTCCCGACATCAAT 197
Query 181 ACATCAGCTGCTGTTTCAGCCGCTAACCTTCTCCTGAAGAGCGTAGAAGCTGTGCTCCCT 240
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 198 ACATCAGCTGCTGTTTCAGCCGCTAACCTTCTCCTGAAGAGCGTGGAAGCGGTGCTCCCC 257
Query 241 AAACAGAAGAAGAATTTAGCCATTGTAGAATTCAAGCAGGCAAAAGTAGCACTAAAGAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 AAACAGAAGAAGAATTTAGCCATTGTAGAATTCAAGCAGGCAAAAGTAGCACTAAAGAGG 317
Query 301 CGCAGTAAGAGCTGTGAGGAAAAAGATATAGATATACCTTCACTTCCACAAGATATCCTT 360
|| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGTAGTAAGAACCGTGAGGAAGAAGATATAGATATACCTTCACTTCCACAAGATATCCTT 377
Query 361 ATTCACATCTTCAGTTTCCTCGATG-TATCGTCCTTACTTTCCTCAGCTCAAGTATCTCG 419
||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||
Sbjct 378 ATTCACATCTTCAGTTTCCTCGA-GATATCGTCCTTAGTTTCCTCAGCTCAAGTGTCTCG 436
Query 420 CTCATGGAACTAAGCAACGCATGAGAACTCTCTGTGGCAAACACAATTTGACCTTCACTT 479
||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 437 CTCTTGGAACCAAGCAACGCATGAGAACTCTCTGTGGCAATCACAATTTGACCTTCACTT 496
Query 480 CAATCAAAAAGTCTTGATTCGTATTCAGTCCGGTATTGACTGGAGAGAAGCCTTTAAAAA 539
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 497 CAATCACAAAGTCTTGATTCGTATGCAGTCCGATATTGACTGGAGAGAAGCCTTTAAGAA 556
Query 540 AGCATATATCGCGGCTAATTCATCAAAGGCGTTGAGATCTGGTCGGGGATACTGCAGTTA 599
|||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 557 AGCATACATCGCGGCTAATTCATCGGAGGCATTGAGATCTGGCCGGGGATACTGCAGTTA 616
Query 600 CTGTGATTCTATTGTTTGGCACGACGACTTGAGATGTGCA-AACAAACAATGTCGGTTGA 658
|||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 617 CTGTGATTCTATTGTTTGGCACGAAAACTTGAGATGT-CTGAACAAACAATGTCGGTTGA 675
Query 659 AATCAGGCAACAAGCCACTGGACCTCATATCAACTCACCAGGTTGTCAACTACTTACTGG 718
||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||
Sbjct 676 AATCAGGCAACAAGCCACTCGACCTCATAACAACTCACCAGGTTGTCAACTATTTGCTGG 735
Query 719 GAATAGAGAGTTCTGATGATGAAAGCGAATCAGACGATGAAGCCTATCCTGGACGACTAT 778
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 736 GGATAGAGAGTTCTGATGATGAAAGCGAATCAGACGATGAAGCCTTTCCTGGACGACTAT 795
Query 779 GGAAACTTTCTTACGT 794
||||||||||||||||
Sbjct 796 GGAAACTTTCTTACGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5