BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331653
Length=2850
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52950.1 | Symbols: | unknown protein; Has 30201 Blast hits... 4235 0.0
> AT5G52950.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21473887-21476939
REVERSE LENGTH=2847
Length=2847
Score = 4235 bits (2293), Expect = 0.0
Identities = 2679/2864 (94%), Gaps = 31/2864 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGATTTGTTATACGCCAAAACGCAGCGTTTCGTGCTTTTGATAGATCTTAAT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTGGAGATTTGTTATACGCCAAAACGCAGCGTTTTGTGCTTTTGATAGATCTTAAT 60
Query 61 CCGCTTCTGGTCAAACCCAATTCGGAGCAATACCTAGCCGTCGTGATCTCCGCCGCCGAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCTTCTGATCAAACCCAATTCGGAGCAATACCTAGCCGTCGTGATCTCCGCCGCCGAG 120
Query 121 AAGcttctctcgtttcctcctttatctgcttctctcttctctttcaaattcttcttttct 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTTCTCTTATTTCCTCCTTTATCTGCTTCTCTCTTCTCTTTCAAATTCTTCTTTTCT 180
Query 181 tctctttcttctctcttatcttcctcaaagctctcttcactctcaatttcatcttcttca 240
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 181 TCTCTTTCTTCTCTCTTATCATCCTCAAAGCTCTCGTCACTCTCAATTTCATCTTCTCCG 240
Query 241 ctttcaTTTGACCTTCCTAACCCTACACTTGTCTCTCTTAAACGCGCCATCGACACGGTT 300
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 241 CTTTCATTTGACCTTCCTAACCCTACACTCGTCTCTCTCAAACGCGCCATCGACGCGGTT 300
Query 301 AAACGATGCGAACTTCGATCCAG-TTCTC--TGGCGGTGGCGGCATCGCCTCGTGGGGTT 357
||| ||| ||||||||||| || | | | ||||| ||||||||||||||||||||||
Sbjct 301 AAAGGATATGAACTTCGATCTAGCTCCACGGTGGCGACGGCGGCATCGCCTCGTGGGGTT 360
Query 358 AATGTCGCGGCGAATTTGCGACAGATCGTTTATGATTACGCTTGGGAGCCGGTGGTTCGA 417
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 AATGTCGCGGCGAATTTGCGACAGATTGTTTATGATTACGCTTGGGAACCGGTGGTTCGA 420
Query 418 GATCCGGAGATAGGTATGATTCCTGGATTTACTGATGGTGGGTTAGATATCGTTAAGTCG 477
||||||||||||||||||||||||||||||||||||||||| |||||| | || | ||||
Sbjct 421 GATCCGGAGATAGGTATGATTCCTGGATTTACTGATGGTGGATTAGATGTTGTGAGGTCG 480
Query 478 AATTTGGTCGTGATGTTTTCCCCAATTTCTAGGGATTTGGATTGGGTTTCTGAGTTTCTT 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATTTGGTTGTGATGTTTTCCCCAATTTCTAGGGATTTGGATTGGGTTTCTGAGTTTCTT 540
Query 538 GATGTTAAGACTGGTGATGAGTGTTTTAGCGACTTGGATTTGTTCAAGTCAAAGTTAAGG 597
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GATGTTAAGAGTGGTGATGAGTGTTTTAGCGACTTGGATTTGTTTAAGTCAAAGTTAAGG 600
Query 598 GAGATTTTTAACTGTGTTAATGAGTTATTTGATGATAGAGATATTCAATTAAGCTGGATT 657
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGATTTTTTATTGTGTGAATGAGTTATTTGATGATAGAGATATTCAATTAAGCTGGATT 660
Query 658 GATGTCAAATCTGGAGATGGATTTGGTGAAATTTGTGAATTGGGATTGAAGTCTGGGTTT 717
||||| |||||| | || || ||||| |||||||||||||||||||||||||||
Sbjct 661 GATGTTAAATCT-G-GA--GA-----TGAAAGATGTGAATTGGGATTGAAGTCTGGGTTT 711
Query 718 TTCGATAGTGGGATTAGAGAATTGGGTTGGGGACATTGTTCTACGGATTCAATTGTTTTT 777
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 712 TTCGATAGTGGGATTAGAGAATTGGGTTGGGGGCATTGTTCTACTGATTCAATTGTTTTT 771
Query 778 GGTTCTTCAATTGTTCCCTTTGGATTAATATATCCTA-CAATTGGTATTTGCCCGAAGCT 836
||||||||| ||||||||||||||||||||||||| | |||||||||||| ||| |||||
Sbjct 772 GGTTCTTCAGTTGTTCCCTTTGGATTAATATATCC-AGCAATTGGTATTTCCCCAAAGCT 830
Query 837 ATCTGCTAGTCAGAAATTTACTGTTCAAGCCAGTCTTGAGATTGCAGATGTTAATGGTAA 896
|||| |||| ||||||||||| |||| || |||||||||||||||||| ||||||||||
Sbjct 831 ATCTACTAGCCAGAAATTTACCCTTCAGGCTAGTCTTGAGATTGCAGATATTAATGGTAA 890
Query 897 ACCTATGGAATGCAA--GT-GCGGTGAGCTAGAGTTTTCTTCTTCTGAAAT-TTCTAGTG 952
||||||||||||||| || | |||||| |||||||||||||||||||||| || |||||
Sbjct 891 ACCTATGGAATGCAAGTGTGGTGGTGAGTTAGAGTTTTCTTCTTCTGAAATATT-TAGTG 949
Query 953 GGAAGAGGTGTGATGATTTTATCAACTTAGCTAGTGGGCCTGAACCAGTCAATCAGGACT 1012
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 950 GGAAGAGGTGTGATGAGTTTATCAACTTAGCTAGTGGGACTGAGCCAGTCAATCATGACT 1009
Query 1013 CTCTAATTGACCAGTTTTGTGGTGGG-GTTACCAAACTTAGTATTAAAGCCTTGAGGATG 1071
||||| |||| |||||||||| |||| | ||||||||| |||||||| ||||||||||||
Sbjct 1010 CTCTAGTTGAACAGTTTTGTGATGGGAG-TACCAAACTCAGTATTAAGGCCTTGAGGATG 1068
Query 1072 TGTGATGATCTTATTGAACTAGAGAGGTATACTTGTGATACTTTTGTTGTTCATGAAGTT 1131
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1069 TGTGATGATCTTATTGAACTAGAGAGGTATACTTGCGATACTTTTGTTGTTCATCAAGTC 1128
Query 1132 TCCCAGGAATCTGATCAAGATCAGGAGCAGGAGAGTGTGTTTTGGGCAGACCGGGTTCTT 1191
|||||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||| ||
Sbjct 1129 TCCCAGGACTCTGATCAAGATCAGGAGGAGGAGAGTGCGTTTTGGGCTGACCTGGTTTTT 1188
Query 1192 CAGATATTAGTG-AAGGAGACAGGTGAGAAAGTAGCGAAAAGATCATCACCCATTTGGCA 1250
|||||||||| | |||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 1189 CAGATATTAG-GAAAGGAGACGGGTGAGAGAGTAGCCAAAAGATCATCACCCATTTGGCA 1247
Query 1251 GATATTATTAAGTTATCTCTATAGGGAAGGTTACTCAGCACTGGTATCTTTTTCAAATAG 1310
||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1248 GATCTTATTAAGTTATCTCTATAGGGAAGGTTTCTCAGCATTGGTATCTTTTTCAAATAG 1307
Query 1311 CAATGGTAGTTTGCGGACAGGAATCCTCAAGCCCTTCACTTTCTCGTCAGCTTTAGTCTG 1370
|||||||||||||||||||||||||||||||||||||||||| || || || ||| ||||
Sbjct 1308 CAATGGTAGTTTGCGGACAGGAATCCTCAAGCCCTTCACTTTTTCCTCGGCCTTAATCTG 1367
Query 1371 TGTTTTTGAGAATGGAGTCTCTCCTCAAACTGTGGATCATGAAGATAGTAGGAAGAAAGT 1430
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 TGTTTTTGACAATGGAGTGTCTCCTCAAACTGTGGATCATGAAGATAGCAGGAAGAAAGT 1427
Query 1431 CAGTTGTAACGTATATAAAAGAAAACCAAGAAAAAATACTCTTAATGACATTAGCTGGGA 1490
|||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1428 CAGTTGTAGCGAATATAAAAGAAAACCAAGGAAAAATTCTCTTAATGACATTAGCTGGGA 1487
Query 1491 GGAGTTCTGCAGATTAGTGAAAGATTATGGTCAAATAGATATAGAAGATGTTTATTTCTC 1550
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1488 GGAGTTCTGCAGATCAGTGAAAGATTATGGTCAAATAGATCTAGAAGATGTTTATTTCTT 1547
Query 1551 CAAGCT-TAGCAAGTCCAAGAAATTTAAGTTTCTGAAATGTTGGATGAAACAGATTAGTA 1609
|||| | ||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1548 CAAG-TATAGCAAGTCGAAGAAACTTAAGTTTCTGAAATGCTGGATGAAACAGATTAGTA 1606
Query 1610 AACCCAGAGGCTGCAGCTTATCCGTGGCTAGTTATTGCAATGCATTGGAAGATGTGGGA- 1668
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1607 AACCCAGAGGTTGCAGCTTATCCGTGGCTAGTAATTGCAATGCATTGGAGGATGT-GGAC 1665
Query 1669 GCAAATCCGATTGAGGAAAATAGTAACTCCTCTGAAGAGACAGA-AAAGGCTAGCTCTTC 1727
|||||||| ||||||||||| | |||||||||||||||||||| ||| ||||| ||| |
Sbjct 1666 GCAAATCCAATTGAGGAAAAGAACAACTCCTCTGAAGAGACAGATAAA-GCTAGTTCTCC 1724
Query 1728 TTTACCTGTAGCTGAAGAGGACATTGCTTTGAGTGGAAATCGTATATCTGGAAAGCAGGA 1787
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1725 TTTACCTCTAGCTGAAGAGGACATTGCTTTGAGTGGAAATCGTATATCCGGAAAGCAGGA 1784
Query 1788 AAATGATGCTTCTGTTCATGCATCAGAGTCATCAGAGAATTTCTTCGCTAGTCTTCCTAG 1847
|| | || | | ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1785 AAGTAATACGTATGTTCATGCATCAGAATCATCAGAGAATTTCTTCGTTAGTCTTCCTAG 1844
Query 1848 TAAAATCAAACAAGGGATTGAGTCTGAGGAAATAGAATTGTCAGCTCTGGCCGAGCGGCT 1907
||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1845 TAAAATCAAGCAAGGGATAGAGTCTGAAGAAATAGACTTGTCAGCTCTTGCCGAGCGGCT 1904
Query 1908 TGTCAAGTCCTGTGTCTTCTACTCCTCTCAAAGAGCTGAGAAGGACTATAGCTGTGAGAG 1967
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TGTCAAGTCTTGTGTCTTCTACTCCTCTCAAAGAGCTGAGAAGGACTATAGCTGTGAGAG 1964
Query 1968 TGGAACCCTCTTGTTGGTTACTGACGAGCTAACCAAGATGTTACTGAAAGATCCGAAAGA 2027
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TGGAACCCTCTTGTTGGTCATTGACGAGCTAACCAAGATGTTACTGAAAGATCCGAAAGA 2024
Query 2028 TTTAGTTGCCAAGTTCAAAAAGAAAGATTCATCATCAATGGAAAGTGAGCGGAA-TGCTG 2086
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||
Sbjct 2025 TTTAGTTGCCAAGTTCAAAAAGAAAGATTCATCATCAGTGGCTAGTGAGCGGAATTG-TG 2083
Query 2087 ATGAAGCTGCACCCAGTAGCATCGTTAGAGAATACGAGCTGCAGATTCTTTTCAGGATGG 2146
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 ATGAAGCTGGACCCAGTAGGATCGTTAGAGAATACGAGCTGCAGATTCTTTTCAGGATGG 2143
Query 2147 AGATTCTAAGATGTAAGATAGGTTTGGGGAGTGAGGAATCTGTGACACAGAAGTTTGCGA 2206
|||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| |
Sbjct 2144 AGATTCTAAGATGTAAGAAAGGTTTGGGAAATGAAGAATCTGTGACACAGAAGTTTGCAA 2203
Query 2207 AACAGATTTGCATGTTCCTTGAGGGCATTCAGTGTAAGTTAGATGGCGGATTCTTTGGTG 2266
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2204 AACAGATTTGCATGTTCCTTGAGGGCATTCAGTGCAAGTTAGATGGCGGATTCTTTGGTG 2263
Query 2267 AGTGGAGCCTTGATAAGTATGTCGACAAAACTATAAAAGCCAGGTATCATCATGTTCTTG 2326
| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
Sbjct 2264 AATGGAGCCTTGATAAGTATGTAGACAAAACTATAAAAGCCAGGTATCAGCATATTCTGG 2323
Query 2327 GAGAAGCTGTCAATATAATATATACAGAGATGGATCTGCTCATGTTCACTGATGAGGATC 2386
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2324 GAGGAGCTGTCAATATAATATATACAGAGATGGATCTGCTCATGTTCACTGATGAGGATC 2383
Query 2387 TTGAAGATAGTTTCATGAACAATGAAGACAGTAGTCAATCAGGGAGAGAAAATATCCATA 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 TTGAAGATAGTTTCATGAACAATGAAGACAGTAGTCAATCAGGGAGAGAAAATATCCATA 2443
Query 2447 GCAATTTCAAAAGTCATCATCATAGTCAAAGAAATGAAGATGTTCCTGGTACGAGTAAGC 2506
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2444 GCAATTTCAAAAATCATCATCATAGTCAAAGTAATGAAGATGTTCCTGGTACGAGTAAGC 2503
Query 2507 AGAAAAACACTGAGGAGTGCAGAGAAGCTAAGAAAGAGGTTGAAGCACAAGAAATGAGGG 2566
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2504 AGAAAAACACTGAGGAAAGCAGAGAAGCTAAGAAAGAGGTTGAAGCACAAGGAATGAGGG 2563
Query 2567 AGAGGGCAAGAAGATTCTCGAGTTTCACAAGTTGGATGCCTGATCTTTGTAGAGTTTGGG 2626
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2564 AGAGGGCAAGAAGATTCTCGAGTTTCACAAGTTGGATGCCTGATCTTTGTAGAGTCTGGG 2623
Query 2627 CACCAAAACAAGTAAAGAACTCTAAAGGCAAGGCGGACCAGCAACCGAGAATGGTGAAAA 2686
||||||||||| |||||||||||||||||||| |||||||||| ||||| || ||||
Sbjct 2624 CACCAAAACAAACGAAGAACTCTAAAGGCAAGGCCGACCAGCAACAGAGAACGGCCAAAA 2683
Query 2687 GGAAGAAGGAGCAAAGGTCAGTGGAATATGATAGAGTATGTGAGACACCAATGACAACAA 2746
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2684 GAAAGAAGGAGCAAAGATCAGTGGAATATGATAGAGTATGTGAGACACCAATGACAACAA 2743
Query 2747 TAGAGACCAAACGAACACGAACTGGTAACAAAGATGGCTACGAGTGTGAGACTTTGCCTC 2806
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2744 TAGAGACCAAACGAATACGAACTGGTAACAAAGATGACTACGAATGTGAGACTTTGCCTC 2803
Query 2807 GTAGTTCAGTACCAAAGGCTTTGTTTCAGGATGATTCTTCTTAG 2850
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2804 GTAGTTCAGTACCAAAGGCTTTGTTTCAGGATGATTGTTCTTAG 2847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141621280089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5