BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331662
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53040.1 | Symbols: | RWP-RK domain-containing protein | ch... 1053 0.0
> AT5G53040.1 | Symbols: | RWP-RK domain-containing protein |
chr5:21506967-21507948 REVERSE LENGTH=771
Length=771
Score = 1053 bits (570), Expect = 0.0
Identities = 706/772 (91%), Gaps = 8/772 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTCAAAACATTCCTCTGTTTTTAACTATTCTGCTCTGTTTCTATCACTGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAGTTCGTCAAAACATTCCTCTGTTTTTAACTATTCTGCTCTGTTTCTATCACTGTTT 60
Query 61 CTTCAACAAATGGATCATAACTCTCTTCATCAACTCGATTCTCCGAAAATCGAAAACCAG 120
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||
Sbjct 61 CTTCAACAAATGGATCAGAACTCTCTTCATCATCTCGATTCTCCAAAAATCGAAAACGAG 120
Query 121 TATGAACCAGATTCGTTGTACGACATGCTCGAAAAGTTACCTCCACTCGAGACTCTCCTA 180
||||||||||||||||| ||||||||| | || ||||| ||||| || || ||||||||
Sbjct 121 TATGAACCAGATTCGTTATACGACATGTTAGATAAGTTGCCTCCGCTTGATTCTCTCCTA 180
Query 181 GACACAGAAGATCTGAAACCAAATGCGGGGTTGCATTTTCAGTTTCAGTACAATAGCTTT 240
|| | |||||| ||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 181 GATATGGAAGATTTGAAACCAAATGCAGGGTTGCACTTTCAGTTCCATTACAATAGCTTT 240
Query 241 GACGATTTCTTCGAAAACATCGAAGTGGATATCACAATTCCATCTGATGTTCATTTGTTG 300
|| ||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||
Sbjct 241 GAAGATTTCTTCGAAAACATTGAAGTGGATAACACAATTCCATCTGATATTCACTTGTTG 300
Query 301 ACTCAAGAACCCTACTTCTCAAGTG-----GC-TCCTCTTCACCATTGGCTATCCAAAAC 354
|| ||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 301 ACACAAGAGCCCTACTTCTCAAGTGACTCCTCTTCCTCTTCACCATTGGCTATCCAAAAC 360
Query 355 GACTGCCTCAGTTCTGACgagagagttgaaaagag-aacagtgaagaagaagagaaacct 413
||| | |||| ||| ||| || |||||||||| | |||||| ||||||||||| |||||
Sbjct 361 GACGGTCTCATTTCCAACGTGAAAGTTGAAAAG-GTAACAGTTAAGAAGAAGAGGAACCT 419
Query 414 taagaaaaagaggcaagaCAAATTGGAGATGTCTGAGATCAAACAATTTTTCGATAGGCC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAAGAAAAAGAGGCAAGACAAATTGGAGATGTCTGAGATCAAACAATTTTTCGATAGGCC 479
Query 474 AATAATGAGAGCGGCTAAAGAACTGAACGTGGGACTCACCGTGTTGAAGAAGCGATGCAG 533
|| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GATCATGAAAGCGGCTAAAGAACTGAACGTGGGACTCACTGTGTTGAAGAAGCGATGCAG 539
Query 534 GGAATTAGGAATTTACCGGTGGCCTCACCGGAAGCTCAAGAGTCTGAACTCTCTCATCAA 593
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 540 GGAATTAGGAATTTACCGGTGGCCTCACCGGAAGCTCAAGAGTCTAAACTCTCTTATAAA 599
Query 594 GAATCTCAAGAGTGTTGGAATGGAAGAAGAAGTGAAGAATTTGGAGGAACATAGGGTTCT 653
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 600 GAATCTCAAGAATGTTGGAATGGAAGAGGAAGTGAAGAACTTGGAGGAACATAGGTTTCT 659
Query 654 TATAGAGCAAGAACCGGATGCTGAGCTTAGTGATGGAACAAAGAAGCTAAGGCAAGCTTG 713
||| || |||||||| ||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 660 TATTGAACAAGAACCTGATGCAGAACTCAGTGATGGAACCAAGAAGCTAAGGCAAGCTTG 719
Query 714 TTTCAAAGCCAATTATAAGAGAAGAAAGTCACTTGGTGATGATTATTATTGA 765
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TTTCAAAGCCAATTATAAGAGAAGAAAATCACTTGGTGATGATTATTATTGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5