BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331685
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 ... 793 0.0
AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | ... 617 2e-176
AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 385 2e-106
> AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10
| chr5:21632514-21634229 REVERSE LENGTH=876
Length=876
Score = 793 bits (429), Expect = 0.0
Identities = 441/447 (99%), Gaps = 0/447 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCACCTACATCA 201
Query 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 202 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGGGTCCT 261
Query 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 262 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCGGATTAC 321
Query 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 381
Query 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 441
Query 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 501
Query 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 502 CCCGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGAAGC 561
Query 421 TGGACTCAGAAGTATGCCATGGGCTAA 447
|||||||||||||||||||||||||||
Sbjct 562 TGGACTCAGAAGTATGCCATGGGCTAA 588
> AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9
| chr4:13915820-13917420 REVERSE LENGTH=909
Length=909
Score = 617 bits (334), Expect = 2e-176
Identities = 408/445 (92%), Gaps = 0/445 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60
||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct 218 ATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTCCTACTTCA 277
Query 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120
||||||||||| || ||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 278 TGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTATAATGGGTCCA 337
Query 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180
|| || || |||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 338 TCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCCCTCCAGATTAC 397
Query 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 398 CCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACATTAACAGC 457
Query 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300
|| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 458 AATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTCACAATTTCC 517
Query 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 518 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATGATCCTTTGGTC 577
Query 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 578 CCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACTGCTCGGACC 637
Query 421 TGGACTCAGAAGTATGCCATGGGCT 445
||||| || ||||||||||||||||
Sbjct 638 TGGACCCAAAAGTATGCCATGGGCT 662
> AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme
8 | chr5:16675842-16677509 FORWARD LENGTH=803
Length=803
Score = 385 bits (208), Expect = 2e-106
Identities = 374/454 (82%), Gaps = 11/454 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGA---TCCACCCACA 57
||||| ||||| |||||||||||||| |||||||||| ||||| || |||| || |
Sbjct 68 ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCC 127
Query 58 T-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGG 116
| ||| | |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct 128 TGCAT-TTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGG 186
Query 117 TCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCAG 175
|||| |||||||||| ||| | || ||||| ||| || || ||||| || |||||||| |
Sbjct 187 TCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCGG 245
Query 176 ATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACATT 234
| || |||||||| || || ||||| || |||||||| |||||||| || ||| || ||
Sbjct 246 ACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATATC 304
Query 235 AACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACC 294
||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||| ||||||
Sbjct 305 AACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACC 364
Query 295 ATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCT 354
|||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| |||
Sbjct 365 ATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT 424
Query 355 TTGGTGCCTGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTGC 413
||||| || ||||| || ||||||||||| || ||| ||| ||| |||||| | |||||
Sbjct 425 TTGGTACCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAATACGAGGCTACTGC 483
Query 414 ACGGAGCTGGACTCAGAAGTATGCCATGGGCTAA 447
| | | ||||||||||||||||||||||||||||
Sbjct 484 AAGAAACTGGACTCAGAAGTATGCCATGGGCTAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21263257827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5