BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331707

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05914.1 | Symbols:  | Potential natural antisense gene, loc...   176    3e-43


> AT2G05914.1 | Symbols:  | Potential natural antisense gene, locus 
overlaps with AT2G05915 | chr2:2263151-2264542 REVERSE 
LENGTH=1392
Length=1392

 Score =  176 bits (95),  Expect = 3e-43
 Identities = 140/161 (87%), Gaps = 5/161 (3%)
 Strand=Plus/Plus

Query  584   TGACCATGACCAATCTGTCGTCCTTCGAATCCCTCGAGGATGATCTCTCGATTCACCGTG  643
             |||||||||| |||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct  1154  TGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACCGTG  1213

Query  644   ATCTCACATGTCTCAATGTGCTTCCAAGTCCT-T-GCCTCAAAGCTCTCATGGATTTAAA  701
             ||||||| ||| |||||| |||||||||  || | |  ||||||||||||||||||||||
Sbjct  1214  ATCTCACTTGTTTCAATGCGCTTCCAAG--CTATGGTTTCAAAGCTCTCATGGATTTAAA  1271

Query  702   ATCGATGAACCTTATCTATCTTTTTATGGCATTGGG-AATG  741
             ||||||| | | ||||| || ||||||| ||||||| ||||
Sbjct  1272  ATCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG  1312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37022566339


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5