BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331709
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53530.1 | Symbols: VPS26A | vacuolar protein sorting 26A | ... 1580 0.0
AT4G27690.1 | Symbols: VPS26B | vacuolar protein sorting 26B | ... 1038 0.0
> AT5G53530.1 | Symbols: VPS26A | vacuolar protein sorting 26A
| chr5:21746035-21748595 REVERSE LENGTH=1317
Length=1317
Score = 1580 bits (855), Expect = 0.0
Identities = 892/910 (98%), Gaps = 2/910 (0%)
Strand=Plus/Plus
Query 1 ATGAATTATCTTCTTGGAGCTTTCAAGCCGGCATGTAATATTTCAATCACATTCACTGAT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 169 ATGAATTATCTTCTTGGAGCTTTCAAGCCAGCATGTAATATTTCAATCACATTTACTGAT 228
Query 61 GGGAAAAACCGTAAACAGGTACCCATTAAGAAAGATAATGGACAAATAGTTATGACTCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 229 GGGAAAAACCGTAAACAGGTACCCACTAAGAAAGATAATGGACAAATAGTTATGAATCCA 288
Query 121 CTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAAA 348
Query 181 AAGGTGGAGCACAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGAC 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAAGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGAC 408
Query 241 AGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTGATGTACCTGGGGAAATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 AGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTGATGTACCTGGAGAAATA 468
Query 301 TATGAAAGAAAGACATACCCTTTTGAATTTTCGAGCGTTGAGATGCCATATGAGACATAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TATGAAAGAAAGACATACCCTTTTGAATTTTCGAGCGTTGAGATGCCATATGAGACATAC 528
Query 361 AATGGCGTGAATGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTATGCT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AATGGCGTGAACGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTATGCT 588
Query 421 GGAAGCATCGTGGAATACCAGGACTTTGTGGTCCGTAACTATGTTCCGTC-TCCTCCAAT 479
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 589 GGAAGCATCGTGGAATACCAGGACTTTGTGGTCCGTAACTATGTTCCG-CTTCCTCCAAT 647
Query 480 CAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGCCTGCATATCGAGTTTGAGTA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 648 CAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGTCTGCATATCGAGTTTGAGTA 707
Query 540 CAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTTCTGGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTTCTGGT 767
Query 600 GAGAATCAAGATAAAGAATATGGATCTTGAGATCAGACGGCGAGAATCAACTGGAGCAGG 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 768 GAGAATCAAGATAAAGAATATGGATCTTGAGATAAGACGGCGAGAATCAACTGGAGCAGG 827
Query 660 AGCTAATACTCACGTCGAGACAGAAACACTAGCCAAATTTGAGTTAATGGATGGTGCTCC 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AGCTAATACTCACGTCGAAACAGAAACACTAGCCAAATTTGAGTTAATGGATGGTGCTCC 887
Query 720 AGTTAGAGGCGAATCGATACCTGTAAGAGTGTTCTTGACACCATATGATCTGACACCAAC 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 888 AGTTAGAGGCGAATCGATACCTGTAAGAGTGTTCTTGACACCATACGATCTGACACCAAC 947
Query 780 GCATAAGAACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTCGTGCTGGTGGA 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 948 GCATAAGAACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTTGTGCTGGTGGA 1007
Query 840 TGAAGAGGATCGCCGTTACTTCAAGCAACAAGAAATCACCTTGTACAGGCTCAAGGAGGA 899
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1008 TGAAGAGGATCGCCGTTACTTCAAGCAGCAAGAAATCACGTTGTACAGGCTCAAGGAAGA 1067
Query 900 GACATCTTGA 909
||||||||||
Sbjct 1068 GACATCTTGA 1077
> AT4G27690.1 | Symbols: VPS26B | vacuolar protein sorting 26B
| chr4:13823596-13826395 FORWARD LENGTH=1200
Length=1200
Score = 1038 bits (562), Expect = 0.0
Identities = 804/920 (87%), Gaps = 19/920 (2%)
Strand=Plus/Plus
Query 1 ATGAATTATCTTCTTGGAGCTTTCAAGCCGGCATGTAATATTTCAATCACATTCACTGAT 60
|||||||||||||||||||| |||||||| || || || || || ||||| || |||||
Sbjct 129 ATGAATTATCTTCTTGGAGCCTTCAAGCCCGCCTGCAACATCTCCATCACTTTTTCTGAT 188
Query 61 GGGAAAAACCGTAAACAGGTACCCATTAAGAAAGATAATGGACAAATAGTTATGACT-CC 119
|| ||||| ||||||||||| ||||| |||||||| ||||| || | | | || | ||
Sbjct 189 GGCAAAAATCGTAAACAGGTTCCCATGAAGAAAGAAAATGGTCAGACGGCTCTG-GTGCC 247
Query 120 ACTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAA 179
|| ||||| |||||||| |||||| | |||||| || |||||||||||||||||||||
Sbjct 248 TCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGCATTGAACCATATCAAGGGAA 307
Query 180 AAAGGTGGAGCACAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGA 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGA 367
Query 240 CAGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTG-ATGTACCTGGGGAAA 298
|||||||||||| ||||| |||||||||||||| ||||| | || |||||||||| ||||
Sbjct 368 CAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGA-ACTGGATGTACCTGGAGAAA 426
Query 299 TATATGAAAGAAAGACATACCCTTTTGAATTTTCGAGC-GTTGAGATGCCATATGAGACA 357
|||| ||||| ||||||||||||||||||||| | | | || ||||||||||| ||||||
Sbjct 427 TATACGAAAGGAAGACATACCCTTTTGAATTTCCTA-CTGTGGAGATGCCATACGAGACA 485
Query 358 TACAATGGCGTGAATGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTAT 417
|||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 486 TACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTAACCGTCACTCGTGGCTAC 545
Query 418 GCTGGAAGCATCGTGGAATACCAGGA-CTTTGTGGTCCGTAACTATGTTCCGTCT-CCTC 475
|||||||||||| ||||||||||||| ||| ||||| || ||||| | ||| || |||
Sbjct 546 GCTGGAAGCATCTTGGAATACCAGGAGCTT-GTGGTACGGAACTACGCTCCA-CTTCCTG 603
Query 476 CA-ATCAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGCCTGCATATCGAGTTT 534
| || ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 604 -ATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCACATCGAGTTT 662
Query 535 GAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTT 594
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 663 GAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGGAAAATATATTTTCTT 722
Query 595 CTGGTGAGAATCAAGATAAAGAATATGGATCTTGAGATCAGACGGCGAGAATCAACTGGA 654
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 723 CTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGAATCAACAGGT 782
Query 655 GCAGGAGCTAATACTCACGTCGAGACAGAAACACTAGCCAAATTTGAGTTAATGGATGGT 714
||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||||||
Sbjct 783 GCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTTGAGTTGATGGATGGA 842
Query 715 GCTCCAGTTAGAGGCGAATCGATACCTGTAAGAGTGTT-CTTGACACCATATGATCTGAC 773
||||||||||||| |||||||||||||||||| |||| || | | ||||||||||| ||
Sbjct 843 ACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCC-CCATATGATCTTAC 901
Query 774 ACCAACGCATAAG-AACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTCGTGC 832
|||||||||| | ||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 902 ACCAACGCATC-GCAACATCAACAACAAATTCAGCGTCAAGTATTATCTGAATCTTGTAC 960
Query 833 TGGTGGATGAAGAGGATCGCCGTTACTTCAAGCAACAAGAAATCACCTTGTACAGGCTCA 892
|||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| | |
Sbjct 961 TGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTGTATAGGTTGA 1020
Query 893 AGGAGGA-G-A-CATCTTGA 909
|||| || | | ||||||||
Sbjct 1021 AGGAAGACGCATCATCTTGA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5