BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331721
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53690.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 252 1e-66
> AT5G53690.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:21800487-21800717
FORWARD LENGTH=231
Length=231
Score = 252 bits (136), Expect = 1e-66
Identities = 172/189 (91%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 21 TCTACCCTCGGACTATGAAATTCTTAGG-AGTACTTATAACCGTCTCCAACTGGAATGGT 79
||| |||||||||||||| |||||||| || ||||||| |||| | ||||||||||||
Sbjct 24 TCTGCCCTCGGACTATGATCTTCTTAGGAAG-ACTTATAGCCGTATGAAACTGGAATGGT 82
Query 80 CGACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGAC-AAGTGAAAAG 138
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 83 CTACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGACGAA-TGAAAAG 141
Query 139 AAAGAACATGATCTTGTTACAGGTAAAGTCATATGTGATAAGAAAAGAAAGCACTATGAC 198
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 142 AAGGAACATGATCTTGTTGCAGGTAAAGTCATATGTGATAAGAAAAGAAAGCAATATGAC 201
Query 199 CAATGTTTA 207
| ||||||
Sbjct 202 GAGTGTTTA 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5