BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331729
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53800.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1487 0.0
> AT5G53800.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21848135-21850111
FORWARD LENGTH=1277
Length=1277
Score = 1487 bits (805), Expect = 0.0
Identities = 985/1064 (93%), Gaps = 44/1064 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGACCACGACGGTTCTCCGCCGGAGAACACGAAACGCGAAGTAGAAGATAGA 60
||||||||||||| ||||||| |||||||||||||||| ||||| || || |||||||||
Sbjct 46 ATGGGAAGTGACCGCGACGGTGCTCCGCCGGAGAACACAAAACGAGAGGTTGAAGATAGA 105
Query 61 GAAATCAGAAGAAAATCATCCCGGGAGAAACCTACCGGTGCTGGAAAGGATTCCGGCGAA 120
|| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 106 GATATCAGAAGAAAATCATCCCGGGAGAAACCGAGTGGTTCTGGAAAGGATTCCGGCGAA 165
Query 121 GAGAAAGATGTGAGTCGCCGCCGTGAATCGAAGAAGAGAACAAAAGACGGCAACGATTCC 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 166 GAGAAAGATGTGAGTCGCCGCCGTGAATCGAAGAGGAGAACAAAAGACGGCAACGATTCC 225
Query 181 GGCTCTGAATCTGGTTTGGAAAGTGGTAGCGAGTCTGAATCAGGTAAGGAA-GAAGAGAG 239
|||||||||||||||||||||||||| | || | ||||| || | ||| ||||||||
Sbjct 226 GGCTCTGAATCTGGTTTGGAAAGTGG-A---AG-C-GAATC-GG--A-GAAGGAAGAGAG 275
Query 240 ACGTAGAAGTAGAAAGGATAGAGGGAAGAGGAAATCAGATCGGAAATCATC------TAG 293
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 276 ACGTAGAAGTAGAAAGGATAGAGGGAAGAGGAAATCAGATCGGAAATCATCTAGGAGTAG 335
Query 294 GAGAAGACGTCGTGATTACTCGAGTAGTAGCTCAGATT-Cg-----gaatcggaatcgg- 346
|||||||||||||||||| ||||||||||||||||||| || |||||||| ||||
Sbjct 336 GAGAAGACGTCGTGATTATTCGAGTAGTAGCTCAGATTCCGAATCAGAATCGGAGTCGGA 395
Query 347 --a----g--tctgaggaaagtgagagtgaagatgagaggaggagaaggaagaggaagag 398
| | |||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 396 ATATTCTGATTCTGAGGAGAGTGAGAGTGAAGATGAGAGAAGAAGGAGGAAGAGGAAGAG 455
Query 399 -aagg-ga--g-aga-gaagagaaagagaggaagagaagaagaagagagaaagataagaa 452
|||| || | ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 456 AAAGGAGAGGGAAGAGGAAGAGAAAGAGAGGAAGAGAAGGAGAAGAGAGAAAGATAAGAA 515
Query 453 gaagaggaacaagtctgataaagatggagat------aggaagaagaagaagaagaagaa 506
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 516 GAAGAGGAACAAGTCTGATAAAGATGGAGATAAGAAGAGGAAGGAGAAGAAGAAGAAGAA 575
Query 507 gtctgagaaagtgaagaaagGAGCTGTCACTGAATCATGGGGGAAGTATGGAATCATCAG 566
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 576 GTCTGAGAAAGTGAAGAAAGGAGCTGTTACTGAATCATGGGGCAAGTATGGAATCATCAG 635
Query 567 AGAAACTGATATGTGGAATAAACGACCAGAGTTCACAGCATGGTTGCTTGAAGTAAAAAA 626
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 636 AGAAACTGATATGTGGAATAAACGTCCAGAGTTCACAGCATGGTTGCTTGAAGTAAAGAA 695
Query 627 GGTTAATTTGGAAAGCTTGCCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GGTTAATTTGGAAAGCTTGCCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGA 755
Query 687 AGATCATAATACGGGTACATTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAG 746
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GGATCATAATACTGGTACATTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAG 815
Query 747 ACTTAAGTTGGAAAAAGAGATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTAC 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ACTTAAGTTGGAAAAAGAGATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTAC 875
Query 807 TGTGTTCAATGATGAGGAACAACGCCGGCTAGAGATGCAGGAATTACGCGAAAGGCAAAA 866
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 876 TGTGTTCAATGATGAGGAACAACGCCGACTGGAGATGCAGGAATTACGTGAAAGGCAGAA 935
Query 867 GGAAGAAGAAGTGTTAGCTCTAAAGCGATCAATGGAAGGCGGAATGGCACAAGCTATGAA 926
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 936 GGAAGAAGAAGTGTTAGCTCTAAAGCGATCAATGGAAGGTGGAATGGCGCAAGCTATGAA 995
Query 927 AGAGCAGGCTCGGCTAAAGGAAGAGATGGTGTACTTATACAAGATTGGAGACATGGAGGG 986
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 996 AGAGCAAGCTCGGCTAAAGGAAGAAATGGTGTACTTATACAAGATTGGGGACATGGAGGG 1055
Query 987 TGCAGCTGCTATACAGAGAAGGTTGGATCCGGATGTTCCCATGT 1030
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGCAGCTGCTATACAGAGAAGGTTGGATCCGGATGTTCCCATGT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5