BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331733
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53850.2 | Symbols: | haloacid dehalogenase-like hydrolase ... 1306 0.0
> AT5G53850.2 | Symbols: | haloacid dehalogenase-like hydrolase
family protein | chr5:21860997-21864926 REVERSE LENGTH=1791
Length=1791
Score = 1306 bits (707), Expect = 0.0
Identities = 746/765 (98%), Gaps = 1/765 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTGGCTGCAGCTGCGATGATCGGGTTTCCACAGGCGTATCTGGAAGGGAAGGAG 60
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 110 ATGGCGGTGGCTGCAGCGGCGATGATCGGGTTGCCACAGGCGTATCTGGAAGGGAAGGAG 169
Query 61 GTGAAGGAGACAAGTTCGTTGGTCACTGAACTCTGTCGTCATTTTTATACTCAAGGTTGG 120
||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 170 GTGAAGGAGACGAGTTCGTTGGTTACTGAACTCTGCCGTCACTTTTATACTCAAGGTTGG 229
Query 121 GTATCTGGAACTGGCGGTAGCATAACGATGAAGGTTCATGATGCTTCGATTCCTAAACCG 180
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 230 GTGTCTGGCACTGGCGGTAGCATAACGATGAAAGTTCATGATGCTTCGATTCCTAAACCG 289
Query 181 GAGCAACTTATCGTCATGTCTCCTTCAGGTGTTCAAAAGGAGAGGATGCAACCGGAGGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 GAGCAACTTATCGTCATGTCTCCTTCAGGTGTTCAAAAGGAGAGGATGCAACCTGAGGAT 349
Query 241 ATGTACATCTTATCTGCAAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ATGTACATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCA 409
Query 301 AATAAGCCTCCTAAGTGTACTGATTGTGCTCCTCTTTTCATGAAGGCATATGAGATGCGA 360
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 410 AATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGGCATATGAGATGCGA 469
Query 361 AATGCTGGAGCTGTTATTCACAGTCATGGCATGGAATCTTGTCTTGTGACGATGCTGAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AATGCTGGAGCTGTTATTCACAGTCATGGCATGGAATCTTGTCTTGTGACGATGCTGAAT 529
Query 421 CCGCAAGCCAAAGAATTCCGTATAACTCACATGGAGATGATAAAAGGGATTCAAGGTCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CCGCAAGCCAAAGAATTCCGTATAACTCACATGGAGATGATAAAAGGGATTCAAGGTCAC 589
Query 481 GGATACTATGACGAACTTGTTGTCCCAATCATAGAGAACACCGCATATGAGAATGAACTA 540
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 GGATACTATGATGAACTTGTTGTCCCAATCATAGAGAACACAGCATATGAGAATGAACTA 649
Query 541 ACAGATTCACTCACCAAAGCTATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGC 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACAGATTCACTTACCAAAGCTATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGC 709
Query 601 AATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGGCTGAATGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGGCTGAATGT 769
Query 661 TACCATTATCTGTTCGATGCTGCCATTAAGCTTCATCAACTGGGTCTGGATGCTGCTACC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TACCATTATCTGTTCGATGCTGCCATTAAGCTTCATCAACTGGGTCTGGATGCTGCTACC 829
Query 721 CCAGACCACGGGCCTATCCGAAGAACCATACATTCACAGAATCAA 765
|||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 830 CCAGACCACGGGCCTATCCGGAGAACCATACATTCACAGA-TCAA 873
Score = 1234 bits (668), Expect = 0.0
Identities = 733/765 (96%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 797 TCAAAGATTCACTAA-ACGAAACAGAATGGCCTCGGCGATGTATTGTCCTCGACATTGAA 855
|||| ||||||| || |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 870 TCAAGGATTCAC-AATACGAAAGAGAATGGCCTCGGCGATGGATTGTCCTCGACATTGAA 928
Query 856 GGAACAACTACGCCCATTACTTTCGTCACAGATGTTCTCTTTCCTTATGCTCGTGAAAAC 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGAACAACTACGCCCATTACTTTCGTCACAGATGTTCTCTTTCCTTATGCTCGTGAAAAC 988
Query 916 GTTGGAAAGCACCTGAATTTGACATATGACACAGCAGAAACCCAAGAGGATATTAAGTTG 975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 989 GTTGGAAAGCACCTGAATTTGACATATCACACAGCAGAAACCCAAGAGGATATTAAGTTG 1048
Query 976 TTGCGGGCTCAAGTTGAGGAAGACTTGAGACAGGGTGTAACCGGCGCTGTTCCTATTCCT 1035
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1049 TTGCGGGCTCAAGTTGAGGAAGACTTGAGAGAGGGTGTAACCGGCGCTGTTCCTATCCCT 1108
Query 1036 CATGCTGATGAAGGAAAGGAAAAGGTCATTGCCGCTGTGGTCTCAAACGTAGAGGCAATG 1095
||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1109 CATGCTGATGAAGGAAAAGAAAAGGTGATTGCCGCTATGGTCTCAAACGTAGAGGCAATG 1168
Query 1096 ATAAGAGCTGATAGAAAGATCACTGCTTTAAAGGAATTGCAGGGTCACATATGGCGAACG 1155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATAAGAGCTGATAGAAAGATCACTGCTTTAAAGGAATTGCAGGGTCACATATGGCGAACA 1228
Query 1156 GGTTTTGAGTGTAATGAACTGGAATCTGTTGTTTTCGAGGATGTAGCAGATGCTTTAGAG 1215
|||||||||||| |||||||| || || ||||||| ||||||||||||||||||||||||
Sbjct 1229 GGTTTTGAGTGTGATGAACTGAAAGCTATTGTTTTTGAGGATGTAGCAGATGCTTTAGAG 1288
Query 1216 AAATGGCATTCTTCAGGAATTAAGGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AAATGGCATTCTTCAGGAATTAAGGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAA 1348
Query 1276 AAGCTTCTCTTTGGGAACACCGACTATGGAGATCTGAGAAAGTATTTATCTGGGTTTTTC 1335
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 1349 AAGCTTCTCTTTGGGAACACAGACTATGGAGATCTGAGAAAGTATATATCTGGCTTTTTC 1408
Query 1336 GACACTACAATCGGAAACAAGAAAGAAAGTAAAAGTTACAAGGAGATTACAGAAACATTG 1395
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1409 GACACTACAATCGGAAACAAGAAAGAAAGTAGAAGTTACAAGGAGATAAAAGAAACATTG 1468
Query 1396 GGAGTGGATAATCCTTCAGACATTTTGTTTGTAACAGATGTTTATCAAGAAGCCACAGCT 1455
||||||||| ||||| |||| || ||||||| ||||||||||||||||||||| ||||
Sbjct 1469 GGAGTGGATGATCCTGCAGAGATAATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCT 1528
Query 1456 GCAAAAGCCGCAGGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCG 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 GCAAAAGCCGCAGGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCG 1588
Query 1516 GAAAATCACGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAG 1560
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1589 GAAAATCATGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAG 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5