BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331749
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54064.2 | Symbols: | pseudogene, similar to putative recep... 861 0.0
> AT5G54064.2 | Symbols: | pseudogene, similar to putative receptor
protein kinase-like protein, blastp match of 39% identity
and 1.2e-53 P-value to GP|15289871|dbj|BAB63567.1||AP003224
putative receptor protein kinase-like protein {Oryza sativa
(japonica cultivar-group)} | chr5:21940180-21941679 FORWARD
LENGTH=1500
Length=1500
Score = 861 bits (466), Expect = 0.0
Identities = 596/656 (91%), Gaps = 19/656 (3%)
Strand=Plus/Plus
Query 4 CCCGATGGTG-CGGTAAACTTCAACAACGTAGAGTATATAGCTC--G-T-GTT--G-G-T 54
|||||||| | ||||||||||||||||||||||||||||||||| | | ||| | | |
Sbjct 234 CCCGATGG-GACGGTAAACTTCAACAACGTAGAGTATATAGCTCGTGTTGGTTGGGTGTT 292
Query 55 TGGGTTACTTATGCTGAGAAAGTGCCTCTATGGAATCCTAAAACTGGTAAGTCTACGGAT 114
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 293 TGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGAT 352
Query 115 TTTAATACCAGTTT-TTCTTTCAGAATTGATACCCGTAACCTTTCGAATTACGGTCATGG 173
|||| ||||||||| | |||| || ||||||||||||||||||| |||||||||||||||
Sbjct 353 TTTAGTACCAGTTTCTCCTTTAAG-ATTGATACCCGTAACCTTTAGAATTACGGTCATGG 411
Query 174 GATCTGCTTTTTTCTTGCTCCTGTG-GGAATTCAACTCCCTGTGAACTCAGCTGGTGGTT 232
||||||||| |||||||||||| || || |||||||| ||||||||||||||||||| ||
Sbjct 412 GATCTGCTTCTTTCTTGCTCCTTTGCGG-ATTCAACTTCCTGTGAACTCAGCTGGTGATT 470
Query 233 TCTTGGGTC-TTTTTACTCGAATCGAAGATC-ACATATCTTCGTTTCCGCTTGTTCATAT 290
||||||||| ||||| ||||||||| ||| | || ||||||||||||||| ||||||||
Sbjct 471 TCTTGGGTCTTTTTTTCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCATAT 529
Query 291 TGAGTTTGACTCATTCAGTAACAAAGAATGGGATCCTACAACTGTTGGATCTCATGTGGG 350
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 530 CGAGTTTGACTCATTCAATAACCAAGAATGGGATCCTACCACTGTTGGATCTCATGTGGG 589
Query 351 AATCAATAATAACTCGCTTGTTTCGTCTAACTACACCTCTTGGAATGCAAGCTCACACAG 410
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 590 AATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCACATAT 649
Query 411 CCAAGATATTGGTCATGCAAAGATCTCCTATAACTCTGTTACTAAGAACTTGAGTGTGTC 470
||||||| ||||||||||| | ||||||||| |||||||||||||||| ||||||| |||
Sbjct 650 CCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGTGCGTC 709
Query 471 TTGGGCTTATGAATTAACGTCTGATCCTCTGGAGAGTGTAGGCATTTCTTATATCATTGA 530
|||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||
Sbjct 710 TTGGGCTTATGAATTAACCTCTGATCCTCAGGAGAGTTTAGGCATTTCCTATATCATTGA 769
Query 531 TCTTGCAAAGGTTTTGCCACCAGATGTTACGGTCGGGTTTTCAGCCGCTACTGGATCAAA 590
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 770 TCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTTTCAGCCGCTACTGGATCGGT 829
Query 591 CATAGAGGGACATA-GACTTTTATCATGGGAGTTCAGCTCAAGTTTGGATAGTGAG 645
|| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||
Sbjct 830 CACAGAGGGACATAAG-CTTTTATCATGGGAGTTCATCTCAAGTTTGGATATTGAG 884
Score = 479 bits (259), Expect = 5e-134
Identities = 316/343 (92%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 822 GAGGTTTGTTTATAAGGATCTTGTTATAGCAACCAACAGATTCTCAGCCCAGAGGAAGCT 881
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 882 GAGGTTTGTTTATAAGGATCTTGTTTTAGCTACCAACAGATTCTCAGCCCAGAGGAAGCT 941
Query 882 GGGTGAAGGAGGGTTTGGAGCCGTTTATAGA-GGTTACTTGAACGAAATGGATATGATGG 940
||||||||||||||||| || ||||||||| || |||||||||||||| ||||||||||
Sbjct 942 TGGTGAAGGAGGGTTTGGGGCAGTTTATAGATGG-TACTTGAACGAAATAGATATGATGG 1000
Query 941 TTGCAGTGAAGAAATTGTCTGGTGGTTCCAAGCAGGGAAAGAAAGAGTTTGTAACCGAAG 1000
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1001 TTGCTGTGAAGAAATTGTCTGGTGGTTCCAAGCAGTGAAAGAAAGAGTTTGTAACCGAAG 1060
Query 1001 TTAAGATCATTAGCAAACTGCGACATCGAAACCTGGTGCAACTCATTG-GTTGGTGTAAT 1059
|||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 1061 TTAAGATCATTAGCAAACTGCGTCATCGAAACCTGGTGCAGCCCATTGTGTTGGTGTAAT 1120
Query 1060 GaaaaaaaCGAGTATTTACTGATATATGAGTTCATGCCGAATGGTAGCCTGGACACTCAC 1119
|||||| | |||||||| || ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1121 GAAAAAGATGAGTATTTGCTTATATAGGAGTTCATGCCGAATGGTAGCTTGGACACTCAC 1180
Query 1120 CTCTTTGGGAAAAGACCCC--ATCTCTCCTGGGACATAC-GAT 1159
||||||| ||||||||||| ||||| ||| ||||| || |||
Sbjct 1181 CTCTTTGAGAAAAGACCCCTTATCTCACCTAGGACACACAGAT 1223
Score = 217 bits (117), Expect = 4e-55
Identities = 144/157 (92%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 1196 ATCTTCA-TGAGGAAGGAGATCGGTGTGTATTGCATAGGGACATCAAGGCAAGCAATATC 1254
||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1222 ATCTTCACGGA-GAGGGAGATCGGTGTGTGTTGCATAGGGACATCAAGGCAAGCAATATC 1280
Query 1255 ATGTTGGACATCAATTTCAATGTAAAAGTAGGTGACTTTGGACTGGCTCGATTGATGGAC 1314
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1281 ATGTTGGACATCAATTTCAATGTAAAAGTAGGTGACTTTGGGCTGGCTCGATTGATGGAC 1340
Query 1315 CATGGACTAGGTTCCCATACAACGGGGATAGCAGGAA 1351
|||| |||||| || ||||||| | | |||||||||
Sbjct 1341 CATGAACTAGGCTCACATACAATAGCGCTAGCAGGAA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5