BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331754 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT5G54095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 628 9e-180 > AT5G54095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21952733-21953507 REVERSE LENGTH=681 Length=681 Score = 628 bits (340), Expect = 9e-180 Identities = 384/406 (95%), Gaps = 0/406 (0%) Strand=Plus/Plus Query 1 ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT 198 Query 61 GTCGAGTCCAAGAACGTTGAAACCGAAACCATACCTCAGGAGAAGGCAGATGAAGTCGTC 120 ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||| ||| Sbjct 199 GTCGAGTCCAAGAACGTCGAAACTGAAACCGTATCTCAGGAGAAGGCAGATGAAGTTGTC 258 Query 121 GCAGAGAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACAGAAGGAAGCTGAGGCA 180 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 259 ACAGAAAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACCGAAGGAAGCTGAGGCA 318 Query 181 GCCAAGCCGGCCGAGGCTGAACCAGCTAAGCCTGCCGAGGCTGAGGCAGCCAAGCCTGCG 240 ||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 319 GCCAAACCGGCCGAGGCCGAGGCAGCTAAGCCTGCCGAGGCTGAGGTAGCCAAGCCTGCC 378 Query 241 GAGGTTGAGCAAGCCAAGCCTGCTGAGGCTGAGCCAGCTCCAGAGGCGGTGAAGACCGAA 300 |||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 379 GAGGCTGAGGTAGCCAAGCCTGCTGAGGCTGAGGCAGCTCCAGAGGTGGTGAAGACCGAA 438 Query 301 GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCAACAAAACAAGAGGAGGCTGTTGTA 360 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 439 GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCACCAAAACAAGAGGAGGCTGTTGTA 498 Query 361 GCAGCCAATGATACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT 406 ||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 499 GCAGCCAATTACACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT 544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5