BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331754

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54095.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   628    9e-180


> AT5G54095.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: 9 plant structures; EXPRESSED DURING: L mature pollen 
stage, M germinated pollen stage, 4 anthesis, C globular stage, 
petal differentiation and expansion stage; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G27580.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:21952733-21953507 REVERSE LENGTH=681
Length=681

 Score =  628 bits (340),  Expect = 9e-180
 Identities = 384/406 (95%), Gaps = 0/406 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT  198

Query  61   GTCGAGTCCAAGAACGTTGAAACCGAAACCATACCTCAGGAGAAGGCAGATGAAGTCGTC  120
            ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||| |||
Sbjct  199  GTCGAGTCCAAGAACGTCGAAACTGAAACCGTATCTCAGGAGAAGGCAGATGAAGTTGTC  258

Query  121  GCAGAGAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACAGAAGGAAGCTGAGGCA  180
             |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  259  ACAGAAAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACCGAAGGAAGCTGAGGCA  318

Query  181  GCCAAGCCGGCCGAGGCTGAACCAGCTAAGCCTGCCGAGGCTGAGGCAGCCAAGCCTGCG  240
            ||||| ||||||||||| ||  |||||||||||||||||||||||| |||||||||||| 
Sbjct  319  GCCAAACCGGCCGAGGCCGAGGCAGCTAAGCCTGCCGAGGCTGAGGTAGCCAAGCCTGCC  378

Query  241  GAGGTTGAGCAAGCCAAGCCTGCTGAGGCTGAGCCAGCTCCAGAGGCGGTGAAGACCGAA  300
            |||| ||||  |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct  379  GAGGCTGAGGTAGCCAAGCCTGCTGAGGCTGAGGCAGCTCCAGAGGTGGTGAAGACCGAA  438

Query  301  GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCAACAAAACAAGAGGAGGCTGTTGTA  360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  439  GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCACCAAAACAAGAGGAGGCTGTTGTA  498

Query  361  GCAGCCAATGATACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT  406
            ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  499  GCAGCCAATTACACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5