BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331769
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54225.1 | Symbols: LCR83 | low-molecular-weight cysteine-ri... 355 1e-97
> AT5G54225.1 | Symbols: LCR83 | low-molecular-weight cysteine-rich
83 | chr5:22013878-22014321 FORWARD LENGTH=249
Length=249
Score = 355 bits (192), Expect = 1e-97
Identities = 233/252 (92%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 1 ATGAAGATGGAATCCTTAAAAAAGTTGGTTGTATTCACCCTCATCGTTCTCATCGGAGTC 60
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGAAGATGGAATCCTCAAAAATGTTGGTTGTATTCACCCTCATGGTTCTCATCGCAGTC 60
Query 61 TCCTCCGATC-ACGTCTCCGGTAATCTTGCA-CCGGAGGAGGCTTCGGA-TGAACTGTGC 117
|||||||||| | |||||||||||| ||||| |||| ||||||||| || | ||||||||
Sbjct 61 TCCTCCGATCTA-GTCTCCGGTAATTTTGCATCCGG-GGAGGCTTC-GAGTCAACTGTGC 117
Query 118 TTCAATCCTTGCACTCCTAAACTTGGCAACAACGAGTGCAATACGATTTGTGTGAACAAG 177
|||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 118 TTCAATCCTTGCACTCCTCAACTTGGCAATAACGAGTGCAATACGATTTGTATGAACAAG 177
Query 178 AAATACAAAGAGGGTTCTTGTGTTGGTTTTGGAATTCCCCCTACTTTCAAATATTGTTGT 237
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 AAATACAAAGAAGGTTCTTGTGTTGGTTTTGGAATTCCCCCTACTTCCAAATATTGTTGC 237
Query 238 TGTAAAAATTAA 249
||||||| ||||
Sbjct 238 TGTAAAACTTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5