BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331771
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49 |... 1509 0.0
> AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49
| chr5:22016250-22017933 REVERSE LENGTH=1155
Length=1155
Score = 1509 bits (817), Expect = 0.0
Identities = 917/965 (95%), Gaps = 7/965 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAATCCTCAAGTTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 60
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 148
Query 61 GAAGACGAGAAGCTCGTCGGCTATATTCAAACGCACGGTCCCGGAAAATGGCGAACCCTT 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 149 GAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTT 208
Query 121 CCCAAGAACGCCGGGTTAAAAAGGTGCGGAAAGAGTTGTAGATTGCGATGGACGAATTAT 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 209 CCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTAT 268
Query 181 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 328
Query 241 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCCATTCACTTGCCGGGAAGAACA 300
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 329 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACA 388
Query 301 GATAATGAAATCAAAAACTATTGGAACACTCATATAAAAAAGAAACTCTTACGAATGGGG 360
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 389 GATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGG 448
Query 361 ATTGATCCGGTGACTCATTGTCCCCGAATCAATCTTCTCCAGCTCTCTTCGTTTCTCACC 420
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 449 ATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACC 508
Query 421 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 568
Query 481 AGTATTAATCCTGATATCTTGAATCACCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 540
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 569 AATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 628
Query 541 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACAATGATCAAACCACTTTCACC 600
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 629 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACC 688
Query 601 GGTTTGCTCAACTCATCAACACCACCGGTTCAATGGCAAAACAATGGAGAATACTTGGGA 660
||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 689 GGTTTGCTCAACTCA--A-CACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGA 745
Query 661 GATTATCTCAGTTATAACGGTTCAGGTGATCCATCTA-TGAACCAAGTCCCTCAAACCGG 719
||||||| |||||||| |||| ||||||||||||||| | ||| ||||||||||| ||||
Sbjct 746 GATTATCACAGTTATACCGGTACAGGTGATCCATCTAAT-AACAAAGTCCCTCAAGCCGG 804
Query 720 AAACTACTCATCGGCCGCATTTGTATCCGATCAAATTAACGACGGTGAAAATTTTAAGGC 779
|||||||||||| ||||||||||||||||| || ||||| || ||||| |||||||||||
Sbjct 805 AAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGC 864
Query 780 CGGATGGAATTTCAGCTCATCAATGCTA-CATGGAACTTCGTCAAGCAGCTCGACACCGT 838
||||||||||||||| |||||||||||| | |||||||| || ||||||||||||||||
Sbjct 865 CGGATGGAATTTCAGTTCATCAATGCTAGCG-GGAACTTCATCGAGCAGCTCGACACCGT 923
Query 839 TGGATTCGTCTTCCAATTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTACG 898
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 924 TGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTG 983
Query 899 GTAGCGACATGTTGATGTTTCATCATCATCATGATCAGAATAATAATGCTTTGAATCTAT 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 984 GTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTAT 1043
Query 959 CATAA 963
|||||
Sbjct 1044 CATAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5