BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331780

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54360.1 | Symbols:  | C2H2-like zinc finger protein | chr5:...   213    2e-54
  AT5G54340.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamil...  69.4    5e-11


> AT5G54360.1 | Symbols:  | C2H2-like zinc finger protein | chr5:22071862-22072674 
FORWARD LENGTH=813
Length=813

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 181/211 (86%), Gaps = 11/211 (5%)
 Strand=Plus/Plus

Query  7    AACCAATCTATGTCTTCTTCAAGCTCCTCCTCCTCCCCACAAAAACCTGATCAAAAACTC  66
            |||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||||
Sbjct  7    AACCAATCTATGTCTTCTTCAAG---CTCCTCCTCCCCACACAAACATGATCAAAAACTC  63

Query  67   AAAAGT-CCCGTTGTAACCGTGGAGGAGAAGGAGACAAGGAACAATCCGGAACAAAGGTC  125
            |||||| ||| ||||  |||||||||||||||||||||  ||||||||| ||||||||||
Sbjct  64   AAAAGTGCCC-TTGTGGCCGTGGAGGAGAAGGAGACAATAAACAATCCGAAACAAAGGTC  122

Query  126  TCCTCAAGAGGTTGTGGCTGAAAACACGATCCTTGAGTTGCCTACTTTCGGATTTGAAGT  185
            |||||||||| ||||| ||||||  || | ||||||| |||||| |||| ||||  ||||
Sbjct  123  TCCTCAAGAGATTGTGTCTGAAAGGACAAACCTTGAGATGCCTAGTTTCAGATT--AAGT  180

Query  186  TGT--CCGAACGAAAA-ACAATACCGTGCTA  213
            | |  ||||| ||||| | | ||||||||||
Sbjct  181  TTTTTCCGAAAGAAAAGAGA-TACCGTGCTA  210


 Score =  102 bits (55),  Expect = 5e-21
 Identities = 101/120 (84%), Gaps = 15/120 (13%)
 Strand=Plus/Plus

Query  310  GGCCCGTT-TATGTATGGCCAAGGCGGTAG----CA-GC--TA-CAA--GATGATATTAA  358
            ||||| || || |||||||||||| |||||    || ||  || |||  |||| ||||||
Sbjct  403  GGCCC-TTGTAAGTATGGCCAAGGTGGTAGCTCACATGCTTTATCAACTGATGGTATTAA  461

Query  359  TCTTGATCTCACTCTTGGTCCATCGTCTAAGTCCACAGGAGGCAGCAACAATAGCACTAA  418
            ||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct  462  TCTTGATCTAACTCTTGGTCCATC--C-AAGTCCACAGGAGGCAGCAACAATAGCACTAA  518


 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 53/59 (90%), Gaps = 2/59 (3%)
 Strand=Plus/Plus

Query  594  GGGCTCTAGTCACTCAAAAAGTCTCATCTCAATGGA-AAAGAACATAGCCATGGTGCCT  651
            |||||||||||||||||||||||||||||||| ||  ||| |||| || ||||||||||
Sbjct  690  GGGCTCTAGTCACTCAAAAAGTCTCATCTCAAAGGGGAAA-AACAAAGTCATGGTGCCT  747


> AT5G54340.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily 
protein | chr5:22066831-22067565 FORWARD LENGTH=735
Length=735

 Score = 69.4 bits (37),  Expect = 5e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  687  TTCGCTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTAACTCA  729
            |||| |||||||||||||||||||||||||||||||| |||||
Sbjct  690  TTCGTTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCA  732



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41995746892


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5