BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331796
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits... 508 2e-143
> AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21071944-21074438
FORWARD LENGTH=1244
Length=1244
Score = 508 bits (275), Expect = 2e-143
Identities = 335/363 (92%), Gaps = 8/363 (2%)
Strand=Plus/Plus
Query 298 AAGGATGAAGAAGCAGCAAAACAGAGTCTTTGCGAAGATTTAAACCGTCTGGTACAACAA 357
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 527 AAGGATGAAGAAGCAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAA 586
Query 358 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGCTGAAT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 587 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAAT 646
Query 418 CCAAATAGATCATCTACTTCTATTCAGCAAGTCCAAGAACCGGAGACTAAATCTGTAGTA 477
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 647 CCAAATCGATCATCTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTA 706
Query 478 GACAGCTCACCAGCAGCCAATGCTAATGAGACTCACCCGGGAAAACCAGAAAATAACCAT 537
|||||| |||||||||||||||| || | ||||||||||||||||| |||||||||||
Sbjct 707 GACAGCGCACCAGCAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCAC 766
Query 538 GGGAACGAGGAGGGAGGCAAAGAACATGGAAAGAGGCCAGCAACAGGCCAACAGCTGAAG 597
||||||||||| || || |||||||||||| |||| | | ||| | |||||||||||
Sbjct 767 GGGAACGAGGAAGGTGGTAAAGAACATGGACAGAG---A-C--CAG-C-AACAGCTGAAG 818
Query 598 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGAAAGGGAAGAGGAATTGGAGTCA 657
||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 819 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAA 878
Query 658 TGA 660
|||
Sbjct 879 TGA 881
Score = 484 bits (262), Expect = 3e-136
Identities = 302/321 (94%), Gaps = 3/321 (1%)
Strand=Plus/Plus
Query 1 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 259
Query 61 GCTCCTGTTATTGCTTACACAGAGAAGATCATTGAGGAAGAGCAAGTTCAATTGAGGAAA 120
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 260 GCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAGAGCAAGTTCAGCTGAGGAAA 319
Query 121 TACATTGAGGAGAACTATACAAAAATCAGGGATGTCGAAAGGGAATTTGGAAACCTCACA 180
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 320 TACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAAGGGAATTTGGAAACCTTTCA 379
Query 181 ATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCGATGGAACACTTGAGAAAGAAA 240
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 380 ATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAATGGAACACTTGAGAAAGAAA 439
Query 241 ATTGAAATCTCAACTGAAAGGATCCATGTTGCTAAGTTGGAAGAAGAAGAAGCGCGAAAG 300
|| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 440 ATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGAAAGAAGAAGAAGCGCGAAAG 499
Query 301 G-AT--GAAGAAGCAGCAAAA 318
| || |||| |||| |||||
Sbjct 500 GCATTTGAAGCAGCATCAAAA 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5