BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331822
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54820.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1596 0.0
> AT5G54820.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:22269859-22271777 FORWARD LENGTH=1419
Length=1419
Score = 1596 bits (864), Expect = 0.0
Identities = 1261/1448 (87%), Gaps = 46/1448 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCAATTCAACAAGACAGATTATCAAGTCTTCCCGACGTTCTTTTAATTGTGATC 60
||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||
Sbjct 1 ATGGATTCAATTCAACAAGACAGATTATCTAGTCTTCCCGACATTCTTCTAATTATGATC 60
Query 61 ATCTCTTTCTTGCCGTTTAAGGAATGCGTAAGAACCAGTGCTCTCTCCAGGAGGTGGAGG 120
||||||||||||||||| |||||||| ||||| ||||||| |||||||| ||||||||||
Sbjct 61 ATCTCTTTCTTGCCGTTAAAGGAATGTGTAAGGACCAGTGTTCTCTCCAAGAGGTGGAGG 120
Query 121 TATCTCTGTC-AGGAGACCAGAAACCTTTCTTTTAGGGAATCTGATTTCGTGAGTCCTTA 179
|||||||| | |||||||| |||||||||||||| ||||||||||| ||||| |||| |
Sbjct 121 TATCTCTG-CTTGGAGACCACAAACCTTTCTTTTAAGGAATCTGATTACGTGAATCCTGA 179
Query 180 TATCA-C--TGGTGAATATTCGAGATTTGCAGCTTGTGC-TTCATT-TTTTAGTTTTGCG 234
||||| | || ||||||||||||| ||| ||||| | | |||||| |||| ||| || |
Sbjct 180 TATCACCGATGCTGAATATTCGAGAATTGTAGCTTAT-CGTTCATTCTTTT-GTTCTGTG 237
Query 235 GATAATTGGCTCTCTAGAATTCAAGATCAGGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 294
||||| ||| |||||| || |||| |||| ||||||||||||||||||||||||||||||
Sbjct 238 GATAAATGGGTCTCTATAACTCAACATCAAGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 297
Query 295 AATCCGGTGGGTTTCGAGCATAAGATCGAGGCTCTGATCGAATACGCTGTCTCCAAACGA 354
||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 298 CATCTGGTGGGTTTCGAGGATAAGATCGACGCTCTGATCGAATACGCTGTCTCCACACGA 357
Query 355 GTGAAGAATCTAGTCATTGATTTGTCAAACCCCGCTTGGAGAAACTATAATGATATATCA 414
||||||||| |||| ||||||||||||||||| ||||||||| | || ||||||||||
Sbjct 358 GTGAAGAATTTAGTTGTTGATTTGTCAAACCCCTCTTGGAGAAGCAATGGTGATATATCA 417
Query 415 TCAGTCTGTGTATCATATCTTCATTTTATCGTTACATTGCCCAAAAGCGTTTACAGTCTA 474
| | || | |||| | || | | || ||||||||| ||||||||||||||||||
Sbjct 418 T-A-TC---G--TCAT-T-TT-A-TGTA----TACATTGCCTAAAAGCGTTTACAGTCTA 462
Query 475 ACAACCCTT-GAGTCACTGAAGATCTACGGGTGCAAGTTTGATCCTTCGAGATTCACAAA 533
|||| |||| |||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 463 ACAA-CCTTGGAGTCACTGAAGATTTACGGGTGCAAGTTTGATCCTTCGAAATTCGTAAA 521
Query 534 CCCGGTATTGCTAAGAAGACTCTCTATTGGTTGGATGAGACTTGAAAACCTCCAATCTTT 593
||| |||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||||
Sbjct 522 CCCTGTATTGCTAAGAAGCCTCTCTATTGGTTGGGTCAGACTCGAAAACCTCCACTCTTT 581
Query 594 ACTATCAAAAGCTACTTCCCTCCTGAGTCTAAGTATCAAAGAA-TGCTGGGGCGTTGATA 652
|||||| ||| || ||||||||| |||||||||||||||| || || |||||||||||||
Sbjct 582 ACTATCCAAATCTCCTTCCCTCCAGAGTCTAAGTATCAAA-AATTGTTGGGGCGTTGATA 640
Query 653 TGACGTGGATGGCCGGGCAGTTTAGAGAGCTAGTCCTTGAGAATTTAGACTTCAGTTACA 712
| |||| ||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||
Sbjct 641 TCACGTCGATGGCCGGGCAGTTCAGAGAGCTAGTCATTGAGCATTCAGACTTCAGTTACA 700
Query 713 TGCAATGTTCCTTTGAACTGCCTCGTATACACAGCTTAAAGTACTCAGGCCAAGTT-TTT 771
|||||||| ||||||| |||||||||||||||||||| |||||||| || |||| ||
Sbjct 701 TGCAATGTGCCTTTGAGCTGCCTCGTATACACAGCTTCAAGTACTCTGG-GGAGTTGTTC 759
Query 772 GACTTTTACTTCGACATCA-TGAATGTGATCATACCAAAGGTCTACTTGGATTTTGGAGA 830
|| || ||||||||| | | ||||||||||||||||||| || |||||||||||||||||
Sbjct 760 GAGTTCTACTTCGACGT-AGTGAATGTGATCATACCAAATGTGTACTTGGATTTTGGAGA 818
Query 831 AGAGCGTG-AGTATGATCAACCGA-CTCAGTCGA-CAAGAATATCTGGTGAAGTTATATC 887
|||||| | | ||||||| || | | || || | |||||||||| ||||| ||||| ||
Sbjct 819 AGAGCGAGTA-TATGATCTACAAAGC-CAATC-ATCAAGAATATCGGGTGAGGTTATTTC 875
Query 888 TCGTATCCTCAACGATCTCAGAGCAGCT-AGCACCTTAGCCGTTTGCCCTTATATCCTCC 946
|||||| | ||||| || ||||||||| || || ||| | || ||||||||||||||||
Sbjct 876 CCGTATCATTAACGACCTTAGAGCAGCTGAG-ACTTTAACTGTCTGCCCTTATATCCTCC 934
Query 947 AGACAATCCGAGAATGTAAAAAGCCATTTTATATGCTTCAACCTATGGAAACACGACACT 1006
|| |||| ||||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 935 AGGTTATCCCAGAATGTGAAAAGCCATCTGATTTGCTTCAACCTATGGAAACACGACACT 994
Query 1007 TGGTGCTAAGAACGAAGATG-AGTACGAAGGAGTTGAATGGAATCATTATTCTTCTCAAG 1065
||||| ||||||| |||||| | ||| |||||||| |||||||| ||| ||||||||||
Sbjct 995 TGGTGTTAAGAACTAAGATGCA-TACCAAGGAGTTCAATGGAATAATTCTTCTTCTCAAC 1053
Query 1066 AACTGTCCAAACTTGGAGACTCTAAGTTTTGAGATTCTTCCTTCACGTCCTTTC-CAGAG 1124
||||| || || |||||||| || ||||||| ||||| || || |||||||| | | |
Sbjct 1054 AACTGCCCTAATTTGGAGACGCTTGGTTTTGATATTCTAACTCCATGTCCTTTCTC-G-G 1111
Query 1125 -AAATTCGTCATATGAAGGGATCGATCCGAAAACGTTTTGGATGCAGAACAGAACATGTG 1183
|| ||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||||
Sbjct 1112 CAACTTCGTCAGATGAAGGCATCGATCCTAAAACGTATTGGATGCAGAAGAGAACATGTA 1171
Query 1184 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTGGTAAGGGACTTTGGTGGTTCCTCAAACG 1243
||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||
Sbjct 1172 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTTATTAGGAACTTTTGTGGTTCCTCAAACG 1231
Query 1244 AGTTAAATGTATTGAGGTATTTGATTCGATTAGCGAGCGGGGGTGGAAATGCATTGGAAA 1303
|| ||||||||||||||||||||||||||| ||||||||| | |||| |||| |||||||
Sbjct 1232 AGCTAAATGTATTGAGGTATTTGATTCGATCAGCGAGCGGTGCTGGAGATGCGTTGGAAA 1291
Query 1304 GGGTAGAGCTTTATGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1363
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GAGTAGAGCTTTACGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1351
Query 1364 AAGCGGAGATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGG 1423
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AAGCGGAAATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGA 1411
Query 1424 AAAATTGA 1431
|||| |||
Sbjct 1412 AAAAATGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5