BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331828
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2680 0.0
AT4G27020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1399 0.0
> AT5G54870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27020.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22289135-22291799
FORWARD LENGTH=1805
Length=1805
Score = 2680 bits (1451), Expect = 0.0
Identities = 1548/1595 (97%), Gaps = 6/1595 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCATCATCCTCATCG---TCTTCTTCGCTTTCCTCAATTCTCTCCATCGTC 57
|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 15 ATGGCGTCTTCATCTTCCTCATCGTCTTCTTCTTCGCTTTCATCAATTCTCTCCATCGTC 74
Query 58 ---GTACTGATTCTAATTGTATCAACCGCTGAATCAGTGAAATCACCGTTTCATCCTCGC 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GTAGTACTGATTCTAATTGTATCAACCGCTGAATCAGTGAAATCACCGTTTCATCCTCGC 134
Query 115 GATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCCGATTCTCAACTCTCTTTACGGC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCCGATTCTCAACTCTCTTTACGGC 194
Query 175 GCTGCCGATCTGCTTCCTACTTTCATCGGAACAGCGAGTTCAGGGAACGATTCCGTTGAC 234
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 195 GCCGCCGATCTGCTTCCTACTTTCATCGGAACAGCGAGTTCTGGGAACGATTCCGTTGAC 254
Query 235 TGGAAAGGGGCTTGTTTCTATGAGAACACGGCTTGGTTAGAGTTTCATAACAAGTCTGGT 294
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 255 TGGAAAGGTGCTTGTTTCTTTGAGAACACCGCTTGGTTAGAGTTTCATAACAAGTCTGGT 314
Query 295 AGCGAGTTTGGTGGAGGCACTCTTCACATTAAGGCGGATAAGGCGCATAGTTGGACTTGT 354
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 315 AGCGAGTTTGGTGGAGGCACTCTTCACATTAAGGCGGATAAGGCACATAGTTGGACATGT 374
Query 355 ATGGATCTTTATGTATTTGCAACTCCATATCGTGTGACATGGACTTGGTACTTCATTTCA 414
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 375 ATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCA 434
Query 415 CGACAGCATACTGTGGAATTTCCGGAGTGGGATGGCAGAGCTGAGTATGAATATGTTAAG 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 435 CGACAGCATACTGTGGAATTTCCGGAGTGGGATGGCAAAGCTGAGTATGAATATGTTAAG 494
Query 475 AACAAAGGAGTTTCGATATTCCTTATGCACGCAGGGATGTTAGGAACACTTCAAGCACTG 534
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AACAAAGGAGTTTCTATATTCCTTATGCACGCAGGGATGTTAGGAACACTTCAAGCACTG 554
Query 535 TGGGATGTTTTTCCTCTCTTTACCAATACTGGTTGGGGGGAGAGCTCTAATCTTGCATTT 594
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 555 TGGGATGTTTTTCCTCTCTTTAGCAATACTGGTTGGGGGGAGAGCTCTAATCTTGCGTTT 614
Query 595 CTCGAGAAGCATATGGGAGCTAATTTTGAACCTCGTCCTGAACCATGGGTTACAAATGTT 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTTGAGAAGCATATGGGAGCTAATTTTGAACCTCGTCCTGAACCATGGGTTACAAATGTT 674
Query 655 ACAACTGATCAAATTCAGTCTGGTGATCTCTTAGCTATTTCAAAGATTCGTGGGCGGTGG 714
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 675 ACAACTGATCAAATCCAGTCTGGTGACCTCTTAGCTATTTCAAAGATTCGTGGGCGGTGG 734
Query 715 GGTGGTTTTGAGACCCTTGAGAAATGGGTGAGTGGGGCATATGCTGGTCATTCCGCTGTT 774
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 735 GGTGGTTTTGAGACTCTTGAGAAATGGGTGAGTGGGGCATATGCTGGTCATTCCGCCGTT 794
Query 775 TTCTTGAGAGACTCTGAAGGAAAACTTTGGGTTGGTGAGTCAGGAAATGAAAACGATAAG 834
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 795 GCCTTGAGAGACTCTGAAGGGAAACTTTGGGTTGGTGAGTCAGGAAATGAAAATGATAAG 854
Query 835 GGAGAGGATGTAATAGCAATCTTACCATGGGAGGAGTGGTGGGCATTTGAACAAACAAAG 894
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGAGAAGATGTAATAGCAATCTTACCATGGGAGGAGTGGTGGGCATTTGAACAAACAAAG 914
Query 895 GATGACTCGAATCCTCAGATCGCATTGCTACCTTTGCATCCTGATGTTCGTGCTAAATTC 954
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 915 GATGACTCGAATCCTCAGATTGCACTGCTACCTTTGCATCCCGATGTTCGTGCTAAATTT 974
Query 955 GATGTTGCTGCTGCTTGGAAATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCAC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GATGTTGCTGCTGCTTGGAAATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCAC 1034
Query 1015 AACTTGATTTTTAGTTGGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AACTTGATTTTTAGTTGGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCC 1094
Query 1075 CATCTTGTTGCATCTTTCATGACTGTCTGGAGCCAAATGCAGCCTGAGTATGCTGCTAAC 1134
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1095 CATCTTGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAAC 1154
Query 1135 ATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 ATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTA 1214
Query 1195 CTGGTCGAAGTAGAGAAGCGTGGATCCTCATTTGACAAACTACTGGCAGTACCTGAACAA 1254
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1215 CTGGTAGAAGTAGAGAAGCGTGGATCCTCATTTGACAAATTACTGGCAGTACCTGAACTA 1274
Query 1255 GACGATTGGATATACAGCGATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GACGATTGGATATACAGCGATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATG 1334
Query 1315 TACAAAGAAGCTGGCCTGTTCGGTCCACTTGCTAATTCTATTCAAGTCACGGAATTCACG 1374
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1335 TACAAAGAAGCTGGCCTATTCGGTCCACTTGCTAGTTCTATTCAAGTCACGGAATTCACG 1394
Query 1375 ATCAAAGATGCTTACATGCTCAATTTTTTCGAGAACAATGCAAGTCGTCTTCCTACATGG 1434
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1395 ATAAAAGATGCTTACATGCTCAACTTTTTCGAGAACAACGCAAGTCGTCTTCCTACATGG 1454
Query 1435 TGCAATGACAATGACAATGTGAAGCTTCCTTATTGTCAGATACTTGGGAAATACAGAATG 1494
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1455 TGCAATGACAATGACAGTGTGAAGCTTCCTTACTGTCAGATACTTGGGAAATACAGAATG 1514
Query 1495 GAACTTCCTGGTTACAACACTATGGAACCATACTCGCACATGAATGAACAATGTCCAACT 1554
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1515 GAACTTCCTGGTTACAACACTATGGAACCATACTCGCACATGAACGAACAATGTCCAACT 1574
Query 1555 CTACCTCCAAAGTACAACAGACCAGATAACTGCTA 1589
|| ||||||||||||||||||||||||||||||||
Sbjct 1575 CTGCCTCCAAAGTACAACAGACCAGATAACTGCTA 1609
> AT4G27020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: vacuole; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G54870.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr4:13568432-13571474 REVERSE LENGTH=1837
Length=1837
Score = 1399 bits (757), Expect = 0.0
Identities = 1271/1518 (84%), Gaps = 40/1518 (3%)
Strand=Plus/Plus
Query 93 GAAATCACCGTTTCATCCTCGCGATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCC 152
||||| ||| ||||| ||||| || ||||||||| ||| || || |||||||| |||||
Sbjct 168 GAAATTACCATTTCACCCTCGAGACCTGCTTCCGCTTTTTCCGAGGCAAGTCTCGTGGCC 227
Query 153 GATTCTCAACTCTCTTTACGGC-GCTGCCGATCTGCTTCCTACTTTCATCGGAACAGC-- 209
| | |||| ||||| || | || | |||||| || |||||||||||||| | ||
Sbjct 228 GGTAGTCAATTCTCTCAAC-ACTGCCGTCGATCTCCTCCCTACTTTCATCGGCTCCGCTT 286
Query 210 GAGTTCAGGGAACGATTCCGTTGACTGGAAAGGGGCTTG-TTTCTATGAGAACACGGCTT 268
||| | | ||||| |||| || |||||||| ||||| ||| |||||||||| ||||
Sbjct 287 CTGTT-A-GAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTTT-TATGAGAACAAAGCTT 343
Query 269 GGTTAGAGTTTC-ATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAG 327
|||| ||| || |||||||||| ||| ||| || || || ||||| ||||||||||||
Sbjct 344 GGTTGGAG-CTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGGCACACTTCACATTAAG 402
Query 328 G-CGGATAAGGCGCATAGTTGGACTTGTATGGATCTTTATGTATTTG-CAACTCCATATC 385
| | |||||||| ||||||||||| || |||||| ||||||| |||| | || |||||||
Sbjct 403 GTC-GATAAGGCACATAGTTGGACGTGCATGGATATTTATGTCTTTGTC-ACACCATATC 460
Query 386 GTGTGACAT-GGACTTGGTACTTCATTTC-ACGACAGCATACTGTGGAATTTC-CGGAGT 442
||||||||| ||| ||||||||| ||| | || |||| ||| ||||| ||| |||||
Sbjct 461 GTGTGACATGGGA-TTGGTACTTTGCTTCGA-GAGAGCACACTATGGAA-TTCAAGGAGT 517
Query 443 GGGATGGCAGAGCTGAGTATGAATATGTTAAGAACAAAGGAGTTTCGATATTCCTTATGC 502
|||| || | |||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 518 GGGAGGGTAAAGCTGAGTATGAATATGTTAAGCAGAAAGGAGTTTCGATATTCCTCATGG 577
Query 503 ACGCAGGGATGTTAGGAACACTTCAAGCACTGTGGGATGTTTTTCCTCTCTTTACCAATA 562
| ||||||||||| ||||| || | ||| ||||||||||| || ||||| ||||||||||
Sbjct 578 AAGCAGGGATGTTGGGAACTCTCCGAGCTCTGTGGGATGTCTTCCCTCTGTTTACCAATA 637
Query 563 CTGGTTGGGGGGAGAGCTCTAATC-TTGCATTTCTCGAGAAGCATATGGGAGCTAATTT- 620
||||||||||||||| ||||| | | || ||||| |||| |||||||| ||||||||
Sbjct 638 CTGGTTGGGGGGAGAATTCTAA-CATAGCGTTTCTTAAGAATCATATGGGTGCTAATTTC 696
Query 621 TGAACCTCGTCCTGAACCATGGGTTACAAATGTTACAACTGATCAAATTCAGTCTGGTGA 680
| | ||||||||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||
Sbjct 697 T-ATCCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCACTCTGGAGA 755
Query 681 TC-T-CTTAGCTAT-TTCAAAGATTCGTGGGCGGTGGGGTGGTTTTGAGACCCTTGAGAA 737
| | | ||||||| | |||| || ||||||||||||||||||||||||||||| |||||
Sbjct 756 -CTTAC-TAGCTATCTCCAAA-ATCCGTGGGCGGTGGGGTGGTTTTGAGACCCTAGAGAA 812
Query 738 ATGGGTGAGTGGGGCATATGCTGGTCATTCCGCTGT-TTTCTTGAGAGACTCTGAAGGAA 796
||||| ||||| || ||||||||||| | ||||| | | ||||| ||||||||||| |
Sbjct 813 GTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGT-TTGAGGGACTCTGAAGGGA 871
Query 797 AACTTTGGGTTGGTGAGTCAGGAAATGAAAACGATAAGGGAGAGGATGTAATAGCAATCT 856
|||| ||||||||||| || || |||||||| || |||||||| ||||||||||| || |
Sbjct 872 AACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGCGATAT 931
Query 857 TACCATGGGAGGAGTGGTGGGCA-TTTGAACAAACAAAGGATGACTCGAATCCTCAGATC 915
| |||||||| |||||||||| | ||||||||||| ||||||||||||||||| || ||
Sbjct 932 TGCCATGGGAAGAGTGGTGGG-AGTTTGAACAAACCAAGGATGACTCGAATCCCCACATT 990
Query 916 GCATTGCTACCTTTGCATCCTGATGT-TCGTGCTAAATTCGATGTTGCTGCTGCTTGGAA 974
||||||||||| |||||||||||| | ||| || || || ||||| | ||||| ||| |
Sbjct 991 GCATTGCTACCGTTGCATCCTGAT-TATCGAGCCAAGTTTAATGTTACAGCTGCATGGGA 1049
Query 975 ATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCACAACTTGATTTTTAGTTGGAT 1034
||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1050 ATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTGGAT 1109
Query 1035 TGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTGTTGCATCTTTCAT 1094
|||||| | || | ||| ||||| |||||||| ||||| || |||||||| ||| ||||
Sbjct 1110 CGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCAACTTGTTGCTTCTGTCAT 1169
Query 1095 GACTGTCTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAG-CCTTGA 1153
||| || |||||| |||| |||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1170 GACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCTT-A 1228
Query 1154 ACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTACTGGTCGAAGTAGAGAAGC 1213
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||
Sbjct 1229 ACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAAGC 1288
Query 1214 GTGGATCCTCATTTGACAAACTACTGGCAGTACCTGAACAAGACGATTGGATATACAGCG 1273
|||||||||| |||||| | | |||||||| ||||||||||| ||||||||||| ||||
Sbjct 1289 GTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCTGAACAAGATGATTGGATATATAGCG 1348
Query 1274 ATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATGTACAAAGAAGCTGGCCTGT 1333
|||| |||||||| || || |||||||| || ||||||||||||||||||||||| || |
Sbjct 1349 ATGGGAAATCAACGTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCTTT 1408
Query 1334 TCGGTCCACT-TGCTAATTCTATTCAAGTCACGGAATTCACGATCAAAGATGCTTACATG 1392
||| |||| | | ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1409 TCGATCCAATCT-CTAGTTCCATTCAAGTCACAGAATTCACGATCAAAGATGCTTACATG 1467
Query 1393 CTCAATTTTTTCGAGAACAATGCAAGTCGTCTTCCTACATGGTGCAATGACAATGACAAT 1452
||||| |||||||||| |||||||||||| |||| | ||||||||||||||||||| |
Sbjct 1468 CTCAAGTTTTTCGAGAGTAATGCAAGTCGTTTTCCCAAATGGTGCAATGACAATGACGTT 1527
Query 1453 GTGAAGCTTCCTTATTGTCAGATACTTGGGAAATACAGAATGGAACTTCCTGGTTACAAC 1512
||||||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1528 GTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAAC 1587
Query 1513 ACTATGGAACCATACTCGCACATGAATGAACAATGTCCAACTCTACCTCCAAAGTACAAC 1572
|| ||||| |||||| | || ||||| || || || || |||| |||||||| ||| ||
Sbjct 1588 ACAATGGAGCCATACCCACATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCAC 1647
Query 1573 AGACCAGATAACTGCTAG 1590
|||||| | |||||||||
Sbjct 1648 AGACCAAAGAACTGCTAG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5