BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331830
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-... 1572 0.0
> AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing
protein | chr5:22293325-22295144 FORWARD LENGTH=1333
Length=1333
Score = 1572 bits (851), Expect = 0.0
Identities = 1017/1094 (93%), Gaps = 23/1094 (2%)
Strand=Plus/Plus
Query 1 ATGCTTTCAATACGCAGAAGCTTATTGACTCTAGCCAAAGAGCAAAAAGATTTGTTTTTG 60
||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 22 ATGCTTTCAATTCGCAGAAGCTTA---ACTCTAGCAAAAGAGCCAAAAGATTTGTTTTTG 78
Query 61 TTGTTGTGTAATCTCCGAGCTCGATTTGTATCTACAGATAACTATGATCCACCATTTTCG 120
|| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 79 TTTTTGTGTAATCTCCGAGCTCGATGTGTATCTACAGATGACTATGATCCACCATTTTCG 138
Query 121 CCTCTCTCAAAACCCACTAAACCTCCAAAAGAGACGAAG-A--AGACGAAGAAGAAGCAA 177
|||||||| ||||||||||||||||||||||||| |||| | ||| || ||||||||||
Sbjct 139 CCTCTCTCTAAACCCACTAAACCTCCAAAAGAGAAGAAGAAGCAGAAGACGAAGAAGCAA 198
Query 178 GATCAGTCGT-----C-GG---A-G--CTGAAGATTCCGGTGATTTCAGACCTTCCTTTC 225
|| ||||||| | || | | ||||||||||| |||||||||||||| ||||||
Sbjct 199 GACCAGTCGTCGGAGCTGGTAAATGACCTGAAGATTCCAGTGATTTCAGACCTCCCTTTC 258
Query 226 GATTTTAGGTATTCGTATTCAGAAACCAACCCGGAAATTGAACCAATTGGATTCCGTGAA 285
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 259 GATTTTAGGTATTCGTATTCAGAAACTAACCCGGAAATTGAACCGATTGGATTCCGTGAA 318
Query 286 CCGAAACGGTTTTCTCCTTTTGGACCGGGTCGATTGGACCGGAAATGGACCGGTACTTCC 345
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| ||
Sbjct 319 CCGAAACGGTTCTCTCCATTTGGACCGGGTCGATTGGACCGGAAATGGACTGGGACTACC 378
Query 346 GCACTAGCTTCGCCGGAGATTGATCAGAGTCAATGGGTGGAGGAGAGAACAAGAGTTCTC 405
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 GCACTGGCGTCGCCGGAGATTGATCAGAGTCAATGGGTGGAGGAGAGAGCAAGAGTTCTC 438
Query 406 GGCGAGCCTTTGACAGAGGAAGAAGTTACAGAGCTTGTTGAACGGTATCGGCATAGTGAT 465
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 439 GGCGAGACTTTGACAGAGGATGAAGTTACAGAGCTTATTGAACGGTATCGGCATAGTGAC 498
Query 466 TGTTCACGACAGATTAATCTCGGGAAAGGTGGTGTGACTCACAATATGATAGATGATATT 525
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGTACACGACAGATTAATCTCGGGAAAGGTGGTGTGACTCACAATATGATAGATGATATT 558
Query 526 CATAACCATTGGAAGAAAGCTGAGGCAGTGAGGATCAAATGCTTGGGAGTACCAACTCTT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CATAACCATTGGAAGAAAGCTGAGGCAGTGAGGATCAAATGCTTGGGAGTACCAACTCTT 618
Query 586 GACATGGACAACATATGTTTCCACCTCGAGGAAAAATCTGGTGGAAAGATTGTATACAGA 645
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 619 GACATGGACAACATATGTTTCCACCTCGAGGAAAAATCCGGTGGAAAGATTGTATACAGA 678
Query 646 CACATAAACATTCTAGTTTTGTACCGGGGAAGGAATTATGATCCGAAGAATCGTCCCATC 705
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 679 AACATAAACATTCTAGTTTTGTACCGGGGAAGGAATTATGATCCGAAGAGTCGTCCCATC 738
Query 706 ATACCACTCATGTTGTGGAAGCCTTATCCACCGATATACCCAAGACTTGTAAAGAATGTC 765
|| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 739 ATTCCACTCATGTTATGGAAGCCTCATCCGCCAATATACCCAAGACTTGTAAAGAATGTG 798
Query 766 GCCGATGGGTTA-ACATTTGAAGAGACCAAAGAGATGAGAAATCGCGGGCTTCATTCTCC 824
|| ||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 799 GCTGATGGGTTAGA-ATTTGAAGAGACCAAGGAGATGAGAAATCGTGGGCTTCATTCTCC 857
Query 825 TGCCTTAATGAAACTTACAAGGAATGGTGTCTATGTTAATGTTGTGGGAAGAGTGAGGGA 884
|||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct 858 TGCCTTAATGAAACTTACTAGGAATGGTGTTTATGTTAATGTCGTTGGAAGAGTGAGGGA 917
Query 885 GGAGTTTGAAACAGAAGAGATTGTGAGACTAGATTGCACTCATGTTGGGATGAGTGACTG 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGAGTTTGAAACAGAAGAGATTGTGAGACTAGATTGCACTCATGTTGGGATGAGTGACTG 977
Query 945 CAAACGAATCGGTGTGAAACTAAAGGATTTGGTTCCATGTGTTCCCATATTGTTCAAAGA 1004
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 978 CAAACGAATTGGTGTGAAACTAAAGGAGATGGTTCCATGTGTTCCCATATTGTTCAAAGA 1037
Query 1005 TGAGCAAATCATACTCTGGAGAGGGAAGAGGAATGGTGAAGAAGAGCTTTTTTCACTCTG 1064
|||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1038 TGAGCAGATCATACTCTGGAGAGGGAAGAGGACTGGTGAAGAAGAGCTTGTT--ACTCTA 1095
Query 1065 TGAAAACTTTAATC 1078
|||| |||| |||
Sbjct 1096 TGAAT-CTTTGATC 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5