BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331851

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55132.1 | Symbols:  | Defensin-like (DEFL) family protein |...   231    2e-60
  AT5G55131.1 | Symbols:  | Protein of unknown function (PD694200...   134    5e-31


> AT5G55132.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:22378906-22379548 FORWARD LENGTH=413
Length=413

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 214/255 (84%), Gaps = 14/255 (5%)
 Strand=Plus/Plus

Query  1    ATGGTTTCATCTCATCGATTACTTACGTTGATGGTGTTTGTTCTCCTC-CTCATACCTAT  59
            |||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct  92   ATGGTTGCATCTCATCGATTACTTACGTTGATGGTGTTTGCTCTCCTCAC-CATACCTAT  150

Query  60   GATTTCTGGAGGACAAATTACAGATAAATGTACGGAGGGATGTAGAAGCGA-AAT-GGCT  117
            ||||||||||   | |||| |||||||||||||||| ||||||| |||| | ||| || |
Sbjct  151  GATTTCTGGA---CTAATTTCAGATAAATGTACGGAAGGATGTAAAAGC-ACAATAGGAT  206

Query  118  TGCAATTTAC-ACTGCTTGAAT-AGAGGCTTAGGGCATTGTGAAAAAGCTATACTTCACG  175
             |||||  |  | ||| ||| | ||||||  |||| |||||||||  |||| | ||||||
Sbjct  207  -GCAATACAAGA-TGCATGA-TGAGAGGCGGAGGGTATTGTGAAAGCGCTAAAATTCACG  263

Query  176  GGGCTCCTGTAATTTTTTGTTGCTGCAATGAGTATTCTAATTCTCCCATCTCCAGTCCGG  235
            |||||  |  ||| ||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct  264  GGGCTGTTAAAATATTTTGTTGCTGCAACAATTATTCTAATTCTCCCATCTCCAGTCCGG  323

Query  236  TCATGAAT-GATTGA  249
            |||| ||| ||||||
Sbjct  324  TCATCAATTGATTGA  338


> AT5G55131.1 | Symbols:  | Protein of unknown function (PD694200) 
| chr5:22376583-22376989 FORWARD LENGTH=264
Length=264

 Score =  134 bits (72),  Expect = 5e-31
 Identities = 200/258 (78%), Gaps = 24/258 (9%)
 Strand=Plus/Plus

Query  1    ATGGTTTCATCTCATCGATTACTTACGTTGATGGTGTTTGTTCTCCTCCTCATACCTATG  60
            |||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct  13   ATGGTTTCATCTCATCGACTACTCACGTTGATGGTGTTTGCTCTCCTCCTCATACCTATG  72

Query  61   ATTTCTGGAGGACAAATTA-CAGATAAATGTACGGAGGGATGTA-GAAGCGAAATG-GCT  117
            |||||||||   ||| | | || | || |||||  | ||||||| || || | |   |  
Sbjct  73   ATTTCTGGA---CAA-TCATCA-A-AA-TGTACAAAAGGATGTACGA-GC-ACACCAGAA  123

Query  118  TGCAATTTACACTGCTTGAATAGAGGCTTAGGGCATTGTGAAAAAGCTATA--CT----T  171
            |||||| || | ||| |||| | ||||  |||||||||| ||  |  ||||  |     |
Sbjct  124  TGCAATATAAAATGCATGAAGAAAGGCGGAGGGCATTGTCAAGCATATATAGGCAGAAGT  183

Query  172  CACGG--G---G-CTCCTGTAATTTTTTGTTGCTGCAATGAGTATTCTAATTCTCCCATC  225
            |||||  |   | ||  || || || ||||||||||||| | ||||| ||||||||||||
Sbjct  184  CACGGCCGATTGGCTATTGAAAATTATTGTTGCTGCAATAATTATTCAAATTCTCCCATC  243

Query  226  TCCAGTCCGGTCATGAAT  243
            ||||||||||||||||||
Sbjct  244  TCCAGTCCGGTCATGAAT  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5