BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331859

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   800    0.0  


> AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G22320.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:22396426-22397446 REVERSE LENGTH=860
Length=860

 Score =  800 bits (433),  Expect = 0.0
 Identities = 483/507 (95%), Gaps = 3/507 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAGGTGTAGGATCGAGATTGAGCCGGACTTCTTCGAGATACAGTGGTCCGGCGGCG  60
            |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  73   ATGGAAGGTGTAGGATCGAGATTGAGCCGGACGTCATCGAGATACAGTGGTCCGGCGGCG  132

Query  61   ACGGCGGTTTTCAGTGGCCGTGTAAGGAAGTGGAAGAAGAAATGGGTACGTGTCTCAACC  120
            |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  133  ACGGCGGTGTTCAGTGGCCGTGTAAGGAAATGGAAGAAGAAGTGGGTACGTGTCTCAACC  192

Query  121  TCATCCGTCGGTGTTTTCAGAGCATCTAAATCCAACGGTCGTAAC-A-A-CAATAACAGT  177
            ||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||
Sbjct  193  TCATCCGTCGGTGTTTTCAGAGCATCTAAATCCAACGGTCGTAACAACAGCAACAACAGT  252

Query  178  AACTCACCTCACCATCTACTTCTCCATAAGTGGACTCCACTTACTTCGGCGACGGTTACT  237
            |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  253  AACTCACCACACCATCTACTTCTCCATAAGTGGACTCCACTTACCTCAGCGACGGTTACT  312

Query  238  GCCTCCGACGCTAATGGTTCCGGTGAGACGGAGGAGCCACCTAAACGAAGATTCAGATAC  297
            ||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct  313  GCCTCCGACGCTAATGGTTCCGGTGAGACAGAGGAGTCGCCTAAGCGAAGATTCAGATAC  372

Query  298  GCTCCAATTGCGATGCTTGAGCATAGAGAGAAAGTGGTTTCTAAGGATTCTGAAATTGAA  357
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  373  GCTCCAATTGCGATGCTTGAGCATAGAGAAAAAGTGATTTCTAAGGATTCTGAAATTGAA  432

Query  358  GAGACTGAAGAATTCGACACTGAATCTCCATTACCTAAAGCTGTTGAGTTGGACATGAAC  417
            |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  433  GAGACTGAAGAATTCGACACTGAATCTCCATTACCTAAAGCTGTTGAGCTAGACATGAAC  492

Query  418  ATAACAGATTCAGACCAAACTAAGGAAGCAAAAACTGGGAACTTGAATCTGGGACTGTGT  477
             ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  493  CTAACAGACTCAGACCAAACTAAGGAAGCAAAAACTGGTAATTTGAATCTGGGACTGTGT  552

Query  478  CTGAATTCTGAAGGGACTGAAGAATGA  504
            |||||||||||||||||||||||||||
Sbjct  553  CTGAATTCTGAAGGGACTGAAGAATGA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5