BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331885

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55570.1 | Symbols:  | unknown protein; LOCATED IN: chloropl...   531    3e-150


> AT5G55570.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast; 
Has 35333 Blast hits to 34131 proteins in 2444 species: 
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; 
Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: 
NCBI BLink). | chr5:22514475-22515458 REVERSE LENGTH=742
Length=742

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 379/421 (90%), Gaps = 16/421 (4%)
 Strand=Plus/Plus

Query  17   CTTCTTCAATGTGTCGAGTTCCGTCTCTGTGGACAGTTGGATCAAGACCACGTCAGATAA  76
            |||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  215  CTTCTTCACTGTGTAGAGTTCCGTCTCTGTGGACCGTTAGATCAAGACCACGTCAGATAA  274

Query  77   AATCTACCGCTAGTTTTGTTTCTCCGGGAAGAAGAAGAA---------GAAGCAACGGCT  127
            |||| || ||| |||| ||||||||||||||||||||||         |  ||  |||| 
Sbjct  275  AATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGAAGAAGCCGCGGCGGCGGCGGCGGCA  334

Query  128  TGTTGATGATAAGTAATCGACGGCTGAGAACAAC-ACCATCGGCTCTAAGTGAACTGGCT  186
            || ||| ||| ||||||||||||||   || ||| | | ||||||||||||||||| |||
Sbjct  335  TGATGACGATGAGTAATCGACGGCT--CAA-AACGA-CGTCGGCTCTAAGTGAACTAGCT  390

Query  187  GACACGGTGGCGGAGACAGGAAAATCAGAGATTACGTGGCAGATTATAGTTGGAACTATT  246
            |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct  391  GACACGGTGGCGGAGACAGGCAAATCGGAGATTACGTGGCAGATTATAGTTGGAACCATT  450

Query  247  GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG  510

Query  307  AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTTTAGAGACAACAAA-TATTTTCG  365
            ||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||
Sbjct  511  AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTCTCGAGACAA-AAAGTATTTTCG  569

Query  366  TTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCATGGAGGAGATTCTTTACAGGCTG  425
            ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  570  TTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCATGGAGAAGATTCTTTACAGGCTG  629

Query  426  A  426
            |
Sbjct  630  A  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5